Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F002196585.1_202017-06-16] 1,359 sequences; 49,118,876 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq694 242 4e-59 seq331 104 3e-17 seq948 86.0 7e-12 >seq694 Length=1559318 Score = 242 bits (268), Expect = 4e-59 Identities = 1083/1692 (64%), Gaps = 59/1692 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 ||||| || ||||| || || ||||| ||| |||||| || | || | ||||| | Sbjct 749787 CGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 749845 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||||| ||||| |||||||| ||||| Sbjct 749846 GATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 749905 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582 ||| |||||||| ||||| | | || ||| ||| | | ||||| || | Sbjct 749906 GGCACCTCGATCAGCAGCCATCTGAACGA----CTTGGCGCTGAGAGATCTCCCAAACGG 749961 Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639 |||| |||| | ||||| ||| | || |||| ||||| ||||| || ||| Sbjct 749962 TCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 750021 Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 |||| | | || | | |||||| | | ||||| ||||| | | | || | || Sbjct 750022 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 750075 Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | || || | ||||| || || |||||||| || ||||| |||||| Sbjct 750076 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGA 750135 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| ||||| ||||| |||||||| || || || | || || | Sbjct 750136 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAG 750195 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876 | ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || | Sbjct 750196 TAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 750255 Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 | ||||| || | | || | || | | |||||| || || | Sbjct 750256 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCGAACTGGA 750309 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996 | | |||||||| || || ||||| ||||| | ||| | ||||| ||| |||| Sbjct 750310 GGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCA 750369 Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 || | | | || | | || || || || || || ||||| || || || || || Sbjct 750370 GCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGC---TTGTTG 750425 Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111 || |||| ||| | |||||||| | | || || || || |||| || || Sbjct 750426 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAG 750484 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 ||||||||||| ||||||||||| || || ||||||| | ||||| | || Sbjct 750485 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 750544 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 ||||| ||| ||||||| | || || || | ||| || ||| | Sbjct 750545 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 750604 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGAGCAA 110290 || | || | | | ||| | | | || | || |||| | ||| ||||| | Sbjct 750605 GTGCAACTTCTTGAAGTCGTA-GCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 750663 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 ||| ||||| ||||| |||| |||||| | | ||| || | |||||| || | Sbjct 750664 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGC 750723 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 ||| |||||| || ||| ||| | |||||| || || ||| |||||| |||| Sbjct 750724 ACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCAT 750783 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 |||| ||||||||| ||||| | || || || ||||| | || |||||||| | ||| | Sbjct 750784 CCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA 750843 Query 110471 CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAA 110528 | || || ||| |||| | | || |||| ||||||||| ||||| Sbjct 750844 GTTTCTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAG 750901 Query 110529 GTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAG 110588 |||| || |||| |||||| || | || || || || ||| || | || Sbjct 750902 AGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAG 750961 Query 110589 GGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGA 110648 | ||| | || || ||||| | ||||||||| || ||||| ||||| | || Sbjct 750962 CGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAG 751021 Query 110649 GAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 ||||||||||||| ||| |||| || | ||| ||||| || || || | || || Sbjct 751022 GAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTC 751081 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAG------ACAGCGATGGATCCCTTACGACG 110762 | || ||| |||||||| || ||||| ||| | ||| || || ||| | | Sbjct 751082 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT--GTTG 751139 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 || |||||| |||||||| || ||| |||||||| | |||||||||| || || Sbjct 751140 -CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACC 751198 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| ||| || ||||| || ||| | | ||||| || ||| | | Sbjct 751199 GTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTT 751258 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAA 110941 || ||||||||||| ||| ||| || ||||| ||| |||| ||| | || | Sbjct 751259 CAGGCCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAGTATCGTAGA 751317 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 | || ||||| || |||| | ||| | |||||||| |||| || || ||| Sbjct 751318 TTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 751377 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTT 111059 | || || || |||||||| || || | ||||| ||| ||| ||| ||||||| Sbjct 751378 GGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA--AGAATTTGCTGGACATCAG 751435 Query 111060 GTTGTATGTGTC 111071 ||||||||| || Sbjct 751436 GTTGTATGTCTC 751447 >seq331 Length=1077310 Score = 104 bits (114), Expect = 3e-17 Identities = 250/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 667267 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 667325 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | ||||||| | | | | | || |||||||||||||| ||||| | Sbjct 667326 CAAATCCCCTGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 667385 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | || | Sbjct 667386 TGATGCAAGGAGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 667445 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || |||||||| ||| || || ||| Sbjct 667446 CACCGACAAACATTTCAACGAACTCAGAACCGC-TCACACTGAA-GAATGGTACTCCAGA 667503 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 667504 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 667563 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||| ||||| || | || | ||| |||| ||| ||||| Sbjct 667564 AGCACCTCGAGGGATCTTAGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 667620 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 667621 GCTCACAAACTCC 667633 >seq948 Length=183984 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 70253 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 70312 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 70313 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 70372 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||||| ||| ||| || || Sbjct 70373 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 70431 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 70432 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 70490 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 70491 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 70549 Query 119789 CTC 119791 ||| Sbjct 70550 CTC 70552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965994770200