Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F002196585.1_202017-06-16] 1,359 sequences; 49,118,876 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq472 104 2e-17 seq438 100 2e-16 >seq472 Length=3275154 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| ||||| || ||||| || || || || |||| Sbjct 2259174 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 2259233 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || ||| | || || ||||| Sbjct 2259234 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 2259293 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||||| | ||||| || |||| |||||| Sbjct 2259294 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 2259353 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2259354 ATCCAGAAGGAGTCAAC 2259370 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| ||||| ||||| || | Sbjct 2258436 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 2258495 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | || ||||| || || | || || || || Sbjct 2258496 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCTGACCA 2258554 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || || |||||||| || || || |||| |||||| | |||||||| Sbjct 2258555 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 2258614 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2258615 CATTCAGAAGGAGTCTAC 2258632 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || ||||| ||||| || || | Sbjct 2258946 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 2259005 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || ||| | || || ||||| Sbjct 2259006 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCTCCCGATCA 2259064 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| ||||| || || | || ||| | ||| ||||| Sbjct 2259065 ACAGCGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAA 2259124 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | || || ||| Sbjct 2259125 CATTCAGAAGGAATCTACTCTCCACTTGGTT 2259155 >seq438 Length=841462 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||||||||| || |||||||| || || || || || Sbjct 493553 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 493612 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || || Sbjct 493613 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 493672 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || || || || | |||||| | |||| ||| Sbjct 493673 CAGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTAC 493732 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 493733 AACATCCAGAAGGAGTCCAC 493752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004001610372