Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20fujikuroi_20[genbank_20GCA_5F002196585.1_202017-06-16] 1,359 sequences; 49,118,876 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq438 159 8e-34 seq560 145 2e-29 seq472 140 8e-28 >seq438 Length=841462 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 493559 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 493618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 493619 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 493678 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| |||||| | || || ||| || ||| || Sbjct 493679 CGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 493738 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 493739 CAGAAGGAGTCCACCCTCCACCTGGT 493764 >seq560 Length=559045 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 445691 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 445750 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 445751 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 445810 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| || Sbjct 445811 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 445870 >seq472 Length=3275154 Score = 140 bits (154), Expect = 8e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 2259177 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGTGAC 2259236 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| || || || || || || ||||| Sbjct 2259237 ACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 2259296 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || ||||||||||| || || ||| | |||||||| | || |||| ||| || ||| | Sbjct 2259297 CGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCAC-CTTGAGCGACTACAACAT 2259355 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || || ||||| || || || ||| | |||| Sbjct 2259356 CCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 2259391 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || ||||| || ||||| || || || ||||||| Sbjct 2258728 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCG 2258787 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||| || || || |||||||| |||||||| || || | Sbjct 2258788 ACAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGA 2258847 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || ||||| || |||||||| || | || |||||||| || ||| | || || | Sbjct 2258848 TCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGG 2258907 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || ||||| || Sbjct 2258908 AATCTACCCTTCATCTCGT 2258926 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 2258439 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 2258498 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || || || || ||||||||| Sbjct 2258499 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAA 2258558 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| || || || | ||||| | ||||| ||| | Sbjct 2258559 CGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAACATT 2258618 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 2258619 CAGAAGGAGTCTACTCTTCACCTTGTT 2258645 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || || || || || || || || || Sbjct 2258949 CAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCCGAT 2259008 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| || || || ||||| || || || Sbjct 2259009 ACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAACAG 2259068 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || || || || ||||| | |||||| |||| || ||| | Sbjct 2259069 CGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAACATT 2259128 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 2259129 CAGAAGGAATCTACTCTCCA-CTTGGTT 2259155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203710240406646