Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq2 84.2 5e-11 >seq3 Length=8256178 Score = 129 bits (142), Expect = 1e-24 Identities = 271/399 (68%), Gaps = 4/399 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| || | |||||||| || | | ||||||||| ||| Sbjct 2157713 CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCA 2157654 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 | ||| ||||||||||| || || | | || | | || | | || | ||| || Sbjct 2157653 TTTCTCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAG 2157595 Query 230356 A-ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 || || | || | ||| | || | | || || || || || ||| | || | Sbjct 2157594 GGACGTGCCAGCAAAC-AGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCA 2157536 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGG 230474 |||||| || ||| ||| | || ||| ||| | ||||||||| | | || ||| Sbjct 2157535 GGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAA 2157476 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 ||||||||||||||||| || || || | | ||||| || || ||||||| ||||| Sbjct 2157475 GCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCGGCAACGAGAAGGTGTA 2157416 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 ||| || | ||||| || | || |||||| ||| || ||| || ||||||||||| Sbjct 2157415 CAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTT 2157356 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 |||||| ||||| || |||||| |||| | | ||||| Sbjct 2157355 CTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCGGTGT 2157317 >seq2 Length=8791613 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || | ||| |||| || |||||||| ||||| || || || | || Sbjct 7005356 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 7005297 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || ||||| |||||||| || | || || || || || | || | ||| || Sbjct 7005296 GTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 7005237 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 |||||| || |||| || || ||||| ||| ||| | || ||||||||||| Sbjct 7005236 AAGAATCTTGGCACCGTAGGCAAGAGAGAATGTACAGTTGCAAAGATCCTCACC 7005183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821302879370