Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 122 9e-23 >seq3 Length=8256178 Score = 122 bits (134), Expect = 9e-23 Identities = 366/563 (65%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||| || || || ||||| | || || ||||| ||||| | Sbjct 2157614 AGACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTC 2157673 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| | |||||| || | |||||| | || ||| Sbjct 2157674 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAG 2157733 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||||||||| | |||||||| | | || | ||| | |||| | |||| Sbjct 2157734 AAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCC 2157793 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| |||| || || || | | || ||| || || || | ||| Sbjct 2157794 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 2157853 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAACTG 16495 || || | | | | ||| | || | || || ||||| || || | | Sbjct 2157854 TTGAAGAGGTA---TGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAG 2157910 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| ||||| |||||||| || ||||| || |||||||||||||||||||| Sbjct 2157911 TATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCG 2157970 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || || || ||||| || | || |||||||| ||||| ||||| Sbjct 2157971 GGGATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAG 2158030 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATA 16672 ||||| || || || | ||||| ||||| |||| ||||| || || | | | Sbjct 2158031 GCAGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTG 2158090 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| || | | ||| ||||| | ||| | || || | ||||| ||| ||| || Sbjct 2158091 TTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCT 2158150 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||||||| ||| || Sbjct 2158151 GCCTTCTTGTACATTTGCCAGAT 2158173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413127856680