Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 172 7e-38 >seq3 Length=8256178 Score = 172 bits (190), Expect = 7e-38 Identities = 628/971 (65%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1369478 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1369420 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | |||||| || | || | ||| |||||||| || || ||| Sbjct 1369419 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1369360 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | || || || |||||| || | ||| || | ||| | Sbjct 1369359 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1369300 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAA 53946 ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 1369299 TTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1369243 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 54005 ||||| ||||| || | || | ||| ||||| ||||| | || ||||| | Sbjct 1369242 AGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 1369184 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | ||| || |||| || || || ||||| || |||||||| ||||||||||||| Sbjct 1369183 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 1369124 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 || || || | | | ||||| || || ||||||| ||||| |||||| Sbjct 1369123 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 1369064 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | | || | ||||| ||||| | ||| |||| | | ||||| || ||||| | Sbjct 1369063 CGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 1369004 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| | Sbjct 1369003 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 1368944 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 54304 |||| | ||||||||| |||| ||| || ||| ||||||| || | | | | Sbjct 1368943 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTTC 1368885 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || ||||| || || || | || || || | ||||| ||||| Sbjct 1368884 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 1368825 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || || || ||| |||| | || || || || || | || | | | Sbjct 1368824 CCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGA 1368765 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || ||||| || || || || || || | || || | || ||| Sbjct 1368764 GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTG 1368705 Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | | || ||||| || | ||||| || ||||| ||||| | Sbjct 1368704 TATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGAT 1368646 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| ||||| || | ||| | || ||| || || | |||||||| ||| | ||| Sbjct 1368645 CATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAA 1368586 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || |||||||||||||| ||||| || || || | ||| |||||| ||| Sbjct 1368585 GGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCGAG 1368526 Query 54664 TTTATCCTTAT 54674 || || |||| Sbjct 1368525 TTCCTCTTTAT 1368515 Score = 136 bits (150), Expect = 5e-27 Identities = 368/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| | | ||| | ||||| ||||| | || Sbjct 2157616 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2157675 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 2157676 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2157735 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 || || || || || ||||| |||| ||| | | | | | | | || || Sbjct 2157736 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2157795 Query 24311 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | || |||||||| ||||||||| | ||||| || || || | || | Sbjct 2157796 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2157854 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 | ||||| || | | | || || | || ||||| || | || || Sbjct 2157855 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2157914 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || || ||||| || || || || || || ||||| |||| |||||||| | Sbjct 2157915 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2157974 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| || || | ||||| || | | ||| ||||| || || ||||| ||| | Sbjct 2157975 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2158034 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 24606 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 2158035 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2158094 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 2158095 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2158154 Query 24667 TTTTATACATATTCCAGAT 24685 | || ||||| | |||||| Sbjct 2158155 TCTTGTACATTTGCCAGAT 2158173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720123117520