Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 237 2e-57
seq2 138 1e-27
seq1 129 6e-25
>seq3
Length=8256178
Score = 237 bits (262), Expect = 2e-57
Identities = 398/564 (71%), Gaps = 15/564 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 2158173 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2158114
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750
|||||||| | | | ||||||| | || |||| | || |||||| | ||||||
Sbjct 2158113 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 2158056
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
||| | || || || ||||| ||| ||||||||||||||| |||||||| || ||||
Sbjct 2158055 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 2157996
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| ||||| ||| | ||||||| || |||||||| || || |||||| |
Sbjct 2157995 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 2157936
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927
|||||||| | ||||| |||| || || ||||||||| || ||| | | | ||
Sbjct 2157935 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 2157876
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | | | | | | || |||||| | || || || || ||| || | ||||||
Sbjct 2157875 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 2157819
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046
| || ||||| | || |||||| | || || | | |||||| |||| || ||
Sbjct 2157818 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTT 2157760
Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106
|| || || ||||| ||||| ||||||| || || || |||| || ||||||
Sbjct 2157759 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 2157700
Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166
||||| || ||||||||||| || |||| || ||||||||||| || | ||||||
Sbjct 2157699 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGACGAG 2157640
Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190
||||| || |||||||||||||
Sbjct 2157639 GGTCTTCACACCGACTTTGCCTGT 2157616
Score = 140 bits (154), Expect = 3e-28
Identities = 155/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 6474667 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6474608
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||
Sbjct 6474607 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6474549
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || ||||| || || | |||||||| | |||||||||
Sbjct 6474548 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6474489
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||| || ||
Sbjct 6474488 CATCCAGAAGGAGTCCACCCTTCA 6474465
>seq2
Length=8791613
Score = 138 bits (152), Expect = 1e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| ||||||||| |||| ||||| | ||
Sbjct 2570102 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 2570043
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | ||| || || | ||||| ||||||||||| | || |||
Sbjct 2570042 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 2569983
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| ||||| ||||| || || | ||||||||| ||||||||||
Sbjct 2569982 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 2569923
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || || || ||
Sbjct 2569922 ATCCAGAAGGAGTCGACTCTCCACCTCGT 2569894
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| || || ||| |||| || || | |
Sbjct 2570330 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 2570271
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| || |||| ||||| ||||||||||| | || ||
Sbjct 2570270 GATACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 2570212
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | || | ||| ||||| ||||| || || | ||||||||| ||| |||||
Sbjct 2570211 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAA 2570152
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| | || || || || || | ||| | | |||||
Sbjct 2570151 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGCCTTCGTGGCGG 2570104
Score = 105 bits (116), Expect = 7e-18
Identities = 145/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || | || ||||| ||||||||| | || ||||| | |||||| |
Sbjct 2569810 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGACACTATCG 2569751
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| ||||| ||||| | || ||||| ||| |
Sbjct 2569750 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTG 2569692
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| ||||| ||||| || |||| || |||||| |||||||||||||||||||
Sbjct 2569691 ATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 2569632
Query 40879 GAGGCCACGCTGCATCTAGT 40898
|| | || || || || ||
Sbjct 2569631 GAATCAACCCTTCACCTGGT 2569612
>seq1
Length=11267849
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 6400666 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 6400725
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||| ||||| ||| |
Sbjct 6400726 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 6400785
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 6400786 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6400845
Query 40879 G 40879
|
Sbjct 6400846 G 6400846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217918392240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |