Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 122 8e-23 seq2 120 3e-22 seq1 104 2e-17 >seq3 Length=8256178 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 6474459 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 6474518 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || || ||||||||||| Sbjct 6474519 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6474578 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| ||||| | ||| | ||| || Sbjct 6474579 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 6474638 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 6474639 CCCGTGAGGGTCTTGACGAAAATCTGCATG 6474668 >seq2 Length=8791613 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||||||| | ||||| |||||||||||| Sbjct 2570127 GTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTG 2570186 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || | ||||||||||| ||||| |||||||||||||| ||| || Sbjct 2570187 CTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 2570246 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| || || | ||| ||||||| ||| | || |||||||| Sbjct 2570247 GGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGT 2570306 Query 118715 CAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || |||||||||| Sbjct 2570307 CAAGGTCTTGACGAAGATCTGCATGG 2570332 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| |||||||||||| Sbjct 2569899 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 2569958 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || | ||||||||||| ||||| |||||||||||||| || || Sbjct 2569959 CTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTT 2570018 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||||||||||| ||| | || ||||| || Sbjct 2570019 GGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGT 2570078 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 2570079 GAGGGTCTTGACGAAGATTTGCAT 2570102 >seq1 Length=11267849 Score = 104 bits (114), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | || || |||||||||||| || || ||| |||| Sbjct 6400844 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6400785 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||||| || || |||||||||||||| || || || || | ||| Sbjct 6400784 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6400725 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 6400724 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 6400665 Query 118731 ATCTGCATGGC 118741 ||| ||||| Sbjct 6400664 --CTGGATGGC 6400656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829347825708