Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 >seq1 Length=11267849 Score = 95.1 bits (104), Expect = 3e-14 Identities = 266/405 (66%), Gaps = 34/405 (8%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| |||| ||| |||| |||||||| ||||| || ||||| || |||| || Sbjct 3932421 CTCCCTCACATGCTGTTCTACGGCCCTCCCGGTACAGGAAAAACGTCGACTGTCCTAGCA 3932480 Query 254061 CTGGCCC-GAACCCTGTTGGGCGAGGGGAACATGAGAGAGC---GCGTGCTCGAGCTGAA 254116 ||||| | | | | ||| | | |||||| || | ||||| ||||| || Sbjct 3932481 CTGGCGAAGGAGCTTTATGGTCCCG----ACATGATCAAGTCGAGAGTGCTTGAGCTCAA 3932536 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCAAGA 254175 |||||| ||||| || || | | ||||||| || ||| |||||| |||| | | | Sbjct 3932537 CGCTTCCGACGAGCGTGGCATCTCCATCGTCCGAGAAAAGGTCAAGAACTTTGCGCGA-A 3932595 Query 254176 TGTCGATTTCGTCGTTCCAACCC---GG------------------CTGTCCGCCTTTCA 254214 || | ||| | | || |||| || ||| || || |||| Sbjct 3932596 TG-CAATT--GACAAACCCACCCCCTGGATACAAAGACAAATATCCCTGCCCTCCGTTCA 3932652 Query 254215 AGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCC 254274 || || | ||||| |||||||| ||| ||||||| || || ||| ||| || || | Sbjct 3932653 AGATCATTATCCTCGACGAGGCCGACTCCATGACCCAAGATGCCCAGAGCGCACTACGAC 3932712 Query 254275 GAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGA 254334 |||| ||||||||| || | | || ||||| || ||| | ||||||||||| | Sbjct 3932713 GAACCATGGAGACGTACAGCAAGATCACTCGTTTCTGTCTGATTTGCAACTACGTCACTC 3932772 Query 254335 AGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| || | ||||| || ||| ||| ||| || ||||||| Sbjct 3932773 GGATTATAGATCCGCTCGCCAGTCGATGCAGCAAATTCCGATTCA 3932817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763662231232