Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 179 5e-40 >seq3 Length=8256178 Score = 179 bits (198), Expect = 5e-40 Identities = 632/973 (65%), Gaps = 18/973 (2%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679 || || || || ||||| || ||||||| || | ||| |||| || || |||||||| Sbjct 1369478 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1369420 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| | ||||| || | || | ||| |||||||| || || ||| Sbjct 1369419 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1369360 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 1369359 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1369301 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATA 79853 | || ||||||| || ||||||| | ||| ||||| ||||| | | ||| | Sbjct 1369300 GTTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1369244 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | | || || ||||| || | || | | ||||| ||||||| ||| ||||| Sbjct 1369243 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 1369186 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 | | ||| || || | || || || ||||| || |||||||| ||||||||||| Sbjct 1369185 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1369126 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || || || || | | | |||||| || || ||||||| ||||| ||||| Sbjct 1369125 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 1369066 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | | || | ||||| ||||| | ||| ||||| | | || ||||| ||||| Sbjct 1369065 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1369006 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1369005 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 1368946 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| ||||||||||| |||| ||| || ||| ||||||| || | | | Sbjct 1368945 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1368887 Query 80214 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 | | || || || || ||||| || || || | || || || | ||||| |||| Sbjct 1368886 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1368827 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || ||||| || || |||| | || || || || || | || | | Sbjct 1368826 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 1368767 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 ||| || || || ||||| || || || || || || | || |||| || | Sbjct 1368766 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 1368707 Query 80393 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATT 80451 |||| ||||| | | || ||||| || | ||||| || ||||| ||||| Sbjct 1368706 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 1368648 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||| ||||| || | ||| | || ||| | || | | |||||| ||| | | Sbjct 1368647 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 1368588 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 || ||| || |||||||||||||| ||||| || || || | ||| | |||| | Sbjct 1368587 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 1368528 Query 80572 AGTTTATCCTTAT 80584 |||| || |||| Sbjct 1368527 AGTTCCTCTTTAT 1368515 Score = 163 bits (180), Expect = 4e-35 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| ||||||||||| | | ||| || ||||| ||||| | || Sbjct 2157616 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2157675 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 2157676 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2157735 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATG 50135 ||| || || || || ||||| |||||||| | || | | | | | | || || Sbjct 2157736 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2157795 Query 50136 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | || |||||||| ||||||||| | ||||| || || || | ||| | Sbjct 2157796 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2157854 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 | ||||| || | | | || || | || |||||||| | || || Sbjct 2157855 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2157914 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 |||| || || ||||| || || ||||| || || ||||| |||| |||||||| | Sbjct 2157915 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2157974 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 |||| || || | ||||| ||| | | ||| ||||| || || ||||| ||| | Sbjct 2157975 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2158034 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT---TAGTTTATTCC 50431 | || || || | | || || || | || |||| | || | | || |||| Sbjct 2158035 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2158094 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 2158095 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2158154 Query 50492 TTTTATACATATTCCAGAT 50510 | || ||||| | |||||| Sbjct 2158155 TCTTGTACATTTGCCAGAT 2158173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267013306360