Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq9 140 2e-28
seq3 96.9 2e-15
>seq9
Length=7721
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5335 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5394
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 5395 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5429
>seq3
Length=8256178
Score = 96.9 bits (106), Expect = 2e-15
Identities = 202/297 (68%), Gaps = 8/297 (3%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAA 6252
|| || ||||| || ||||| ||| ||| ||||| ||||| |||| || || ||||
Sbjct 2222259 GATGCTTTCTATCGTTACAAGATGGAGCG--TCTGCAGACCAAGATCGAAGGCAAAGGAA 2222202
Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGGACGCCC 6310
|||||||||| ||||| |||||||| | | | | || || | |||| || ||
Sbjct 2222201 ACGGTATTAAGACCGTTGTTGTCAACCT--CAGCAGTGTAGCAGCCTCACTCGCCCGTCC 2222144
Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370
| | ||||| | || || ||||| | ||||||||| ||||| || | |||| |
Sbjct 2222143 CGGCTCCTACGTCATCAAGTACTTCGGTTTCGAACTTGGTGCTCAAACCAACATTGACCC 2222084
Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430
||| |||| || | ||| | ||||| | || | | ||||||| ||||| ||
Sbjct 2222083 CAAGGACGACCGTTGGATCATCAACGGTGCCCACGATGCCCCCAAGCTCCAGGATCACCT 2222024
Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|| ||||| || ||||||||| || || | ||| | ||||| ||||||||
Sbjct 2222023 CGATGGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 2221967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946387648369
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |