Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 111 3e-19 seq2 98.7 2e-15 >seq3 Length=8256178 Score = 111 bits (122), Expect = 3e-19 Identities = 397/615 (65%), Gaps = 17/615 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||| ||||| ||| Sbjct 2157350 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 2157409 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || || |||| || || || || || || || | Sbjct 2157410 GACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACGAATTCGATG 2157469 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || |||||| | |||||| | Sbjct 2157470 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGGAGAGCCTCAGTAAGA 2157529 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || | | ||| || || | ||| ||| ||| ||| | | | | Sbjct 2157530 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 2157589 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| ||||||||||| Sbjct 2157590 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCGGTGTGAAGACCCTCGTC 2157645 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| |||| |||||| || | | ||| |||||||| | ||||| ||| ||||||| Sbjct 2157646 ACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 2157705 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||||| || ||| | | |||||| || | | |||||||| Sbjct 2157706 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 2157765 Query 251979 GCGCTCAGCAAACG------ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| ||| || | ||| ||||| || | | || ||||| | ||||| Sbjct 2157766 ACGCTGAGCGAAGGTAGAGTTCTTATCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 2157822 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | || || || || | || | ||||| | | |||| |||| ||| Sbjct 2157823 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 2157882 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| | ||| | ||||| ||||| | || || |||||| || | | || Sbjct 2157883 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 2157942 Query 252153 CTGGTAAGCATAGAA 252167 |||| || ||||||| Sbjct 2157943 CTGGAAACCATAGAA 2157957 Score = 84.2 bits (92), Expect = 4e-11 Identities = 230/350 (66%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148 |||| ||||| ||| ||||| ||| || | || |||| | || || |||| Sbjct 1369273 CCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAG 1369214 Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCT 294208 ||||||||||| |||| |||| | |||| ||| | | | | |||| || |||| Sbjct 1369213 CAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCT 1369154 Query 294209 TCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCT 294268 ||||||| |||||| || ||| | || | |||| || || ||||| | ||||| Sbjct 1369153 TCATGAAAAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCT 1369094 Query 294269 CACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGAT 294328 ||| ||||| ||||| ||||| || | || ||||| || ||||| || | Sbjct 1369093 TACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGT 1369034 Query 294329 ACACAGCAAAGG-ACCCCTT--CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT 294385 | | || |||| ||| | | || || ||||||| |||| || ||| ||| Sbjct 1369033 AGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGT 1368974 Query 294386 CAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCG 294435 ||||| |||||| || ||||| || | ||| ||||||||| ||| Sbjct 1368973 TGAACACACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCG 1368924 >seq2 Length=8791613 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || |||||||||||||||||||| | | || || || || | Sbjct 1735836 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 1735895 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| || |||||||| || ||||| || || || ||||| | ||| ||||| | || Sbjct 1735896 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATTGC 1735955 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | | || | || ||||| |||||| Sbjct 1735956 ATGGCTCGAGAACTACCT--CAAGTCTCACCCCGACATTACCAGTCTTATTGTTTCTCAC 1736013 Query 279873 GACTCTGGCTTC 279884 |||||||||||| Sbjct 1736014 GACTCTGGCTTC 1736025 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 7005183 GGTGAGGATCTTTGCAACTGTACATTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 7005242 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| |||||||| || | Sbjct 7005243 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 7005302 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 7005303 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 7005361 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 7005362 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 7005407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834179337359