Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 313 5e-80 >seq3 Length=8256178 Score = 313 bits (346), Expect = 5e-80 Identities = 593/862 (69%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || |||||||| || || Sbjct 2158173 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2158114 Query 42360 GCCAAGGACACGGCCGGCTGG-------GAGTCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 ||||||| || |||| || | ||| | ||| ||| | | ||| | Sbjct 2158113 TCCAAGGATCTCCACGACTGGAACAACCGATTGACT---TCAGA-CGAGCAATACTTCAT 2158058 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 | |||| || || |||||||| ||||| |||||||| ||||||||||| || | Sbjct 2158057 CTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGA 2157998 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||| ||||| ||| | ||||| || |||||||| || |||||||| Sbjct 2157997 GCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCAT 2157938 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| || ||| || || || | || |||||| ||| || Sbjct 2157937 GATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCC 2157878 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||||| || ||||| ||| | || || || || |||||| |||||||| Sbjct 2157877 TGCCCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 2157818 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||| ||||| || |||||| || | || | || |||| || | || || || Sbjct 2157817 GGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTTGC 2157758 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||| ||||| ||||||||| || ||||| || ||||||||||||||||| Sbjct 2157757 TTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAA 2157698 Query 42773 GCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || ||||| || || | ||| || ||||| ||||| | ||||||| Sbjct 2157697 GAAGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGACGAGG 2157639 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||||||||| ||||| ||| |||||| ||| || ||| | Sbjct 2157638 GTCTTCACACCGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC- 2157583 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || || | ||| || ||| ||||| || ||||| || ||| ||||||| || || Sbjct 2157582 AAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACT 2157523 Query 42951 CAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| ||||||||||| | |||||||| |||||||| | Sbjct 2157522 GAGGCTCT-CCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGA 2157464 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 | |||||| || | |||||| | | |||| || || | ||||| | Sbjct 2157463 ATTCGTCGCTGATCGTCTCCT------CGTTGCTCTCGGCAACGAGAAGGTGTACAAGTC 2157410 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | ||| |||||||| |||||||||||||| | | |||||||||||||| ||||| Sbjct 2157409 CACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGA 2157350 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || ||||||||| Sbjct 2157349 GAAGCGCGTTGCTGACTACCAG 2157328 Score = 291 bits (322), Expect = 2e-73 Identities = 887/1362 (65%), Gaps = 49/1362 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| |||| | || || Sbjct 1370052 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1369993 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || || ||||||| || ||||||| || || || || ||||| || | || Sbjct 1369992 CTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1369933 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | ||||| ||| || || ||| | ||||||||| Sbjct 1369932 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCA 1369873 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | ||||| | | | || ||||||||| ||||| || | |||| Sbjct 1369872 AAGGTC--AGAGGGCTTGACATT-------CCACATGTCGAACTGGAGAATACCCTCAGA 1369822 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | | ||| ||||| | |||| | ||||||||| || || ||| || | |||| | Sbjct 1369821 GGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTTGCACAGACGT 1369762 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||||| |||| |||||||||||||||||| |||||||| || || |||| Sbjct 1369761 AGTA-AGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCT--- 1369706 Query 244449 CGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 |||| || |||| |||| | | ||| | || || || || ||||| || Sbjct 1369705 --CAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAGACCTTGCACACC 1369648 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||||| ||| ||| ||||| | || || | || ||||| ||| Sbjct 1369647 AAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTT 1369588 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||||| | |||||| | | | ||| ||| |||| || Sbjct 1369587 GACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTT 1369528 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| | | | ||| || || || | | ||| | || | | Sbjct 1369527 GAAGTCGTA---GCAAGCATCTTC----ATAGT-----TGATAAAAGAGGGCAGAGACAA 1369480 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 | ||| |||||||| || || ||||| || | | | ||| | | ||||| ||||| Sbjct 1369479 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCA 1369420 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| || |||||| || |||| || || || |||| |||||| || Sbjct 1369419 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1369360 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || |||||||| |||||| | || | | || ||| || Sbjct 1369359 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1369300 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | | ||||| |||| |||||| |||||| |||||| || Sbjct 1369299 TTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1369240 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| || ||| || || || | ||||| ||||| |||||||||||| | Sbjct 1369239 CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGT 1369180 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| |||||| || ||| | || |||||| || || |||||||| || || ||| Sbjct 1369179 CCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAAGAA 1369120 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAA 245102 ||||| | | | ||| ||| || ||| ||||| | || || | || || | Sbjct 1369119 CAGGTCACGAGCGCGGACCTCCTCCTTACC-GTGATTCTTTCGGAGATCAAGGAACTCGA 1369061 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||||||| ||||||| || || | ||||| |||| ||| || || |||||||| || | Sbjct 1369060 AGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCAC 1369001 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 |||||| || | | ||||| |||||| | ||||| | || || || ||| Sbjct 1369000 CCTGGT----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCG 1368945 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATG 245275 || || || ||||| || |||||| | ||| || | | || ||| | | | Sbjct 1368944 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTT- 1368886 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || ||| | || || || |||||| || | ||| || |||||| ||| || Sbjct 1368885 --CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAG 1368828 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || ||||||||| |||||| | | || ||||| || || ||||| |||| Sbjct 1368827 ATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGT 1368768 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 || | | | |||||| | ||||||||| || || || ||| Sbjct 1368767 GGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAG 1368726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336850956240