Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq3 172 5e-38
>seq3
Length=8256178
Score = 172 bits (190), Expect = 5e-38
Identities = 317/462 (69%), Gaps = 2/462 (0%)
Strand=Plus/Plus
Query 93907 TTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GATGACGAACAAGGC 93965
|||||||| || || || ||| ||| | || || || ||||| | ||| | ||||
Sbjct 1368751 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGAT-ATGAAGGA 1368809
Query 93966 CGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGC 94025
||| ||| || || | ||| | ||||||| ||||| | || || || ||
Sbjct 1368810 GGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGC 1368869
Query 94026 GGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTAC 94085
|| || || || | | | |||| | ||||||| || || |||||| ||||||
Sbjct 1368870 TGGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTAC 1368929
Query 94086 CAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTA 94145
|||||| || |||||||| |||| || ||||| || || ||||||||| | || || ||
Sbjct 1368930 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 1368989
Query 94146 CGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCA 94205
||| |||||||||||| | | | ||| | ||||| |||| || || || |||||
Sbjct 1368990 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 1369049
Query 94206 CGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGC 94265
||| ||||| | ||| | || || |||||||| ||||| || || || | ||
Sbjct 1369050 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 1369109
Query 94266 CAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAA 94325
| ||||| |||| ||||| ||| | || || ||||| ||||| || ||||||| |||
Sbjct 1369110 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 1369169
Query 94326 CTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367
| || |||| ||| | || || || ||||| || || ||
Sbjct 1369170 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCT 1369211
Score = 125 bits (138), Expect = 7e-24
Identities = 260/384 (68%), Gaps = 10/384 (3%)
Strand=Plus/Plus
Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053
|||| ||| | ||||||||| | ||| ||| |||||||| | || | |||||||||
Sbjct 1369826 AGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGACCTTTGGGACTGGGAAC 1369885
Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113
| || || | ||||| | | |||||| | ||| ||||| || || || ||||
Sbjct 1369886 CCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTGCTCCTATGC 1369945
Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173
| || ||| || ||||||| |||||||||||||| | || || || | ||||||||
Sbjct 1369946 CTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATGCTTTGAGCCTTACACCTCCA 1370005
Query 95174 ACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT-A 95232
|| | ||| | | || || || || || || |||| || ||||| || || |
Sbjct 1370006 ACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCA 1370065
Query 95233 CGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACC----AACTGCTACG 95288
|| | || || | ||||| | ||| || | ||||||| | ||||
Sbjct 1370066 AGGATCTTGTCGAC-ATGGGTCTTTGGTCCGATGCTATGAAGAACCGCATCATTGCT--- 1370121
Query 95289 CGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAA 95348
| ||||| || ||||||||||||| | || || | || |||||||| || |||||
Sbjct 1370122 -GATAACGGTTCTATCCAGAACATCCCCAACATCCCTGCCGAGATCAAGGCTCTGTACAA 1370180
Query 95349 GACCGTGTGGGAGATCCCGCAGCG 95372
||| ||||||||||| | |||||
Sbjct 1370181 GACTGTGTGGGAGATTTCTCAGCG 1370204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494721969376040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |