Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3 172 5e-38 >seq3 Length=8256178 Score = 172 bits (190), Expect = 5e-38 Identities = 317/462 (69%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 93907 TTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT-GATGACGAACAAGGC 93965 |||||||| || || || ||| ||| | || || || ||||| | ||| | |||| Sbjct 1368751 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGAT-ATGAAGGA 1368809 Query 93966 CGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGC 94025 ||| ||| || || | ||| | ||||||| ||||| | || || || || Sbjct 1368810 GGACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGC 1368869 Query 94026 GGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTAC 94085 || || || || | | | |||| | ||||||| || || |||||| |||||| Sbjct 1368870 TGGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTAC 1368929 Query 94086 CAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTA 94145 |||||| || |||||||| |||| || ||||| || || ||||||||| | || || || Sbjct 1368930 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 1368989 Query 94146 CGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCA 94205 ||| |||||||||||| | | | ||| | ||||| |||| || || || ||||| Sbjct 1368990 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 1369049 Query 94206 CGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGC 94265 ||| ||||| | ||| | || || |||||||| ||||| || || || | || Sbjct 1369050 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 1369109 Query 94266 CAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAA 94325 | ||||| |||| ||||| ||| | || || ||||| ||||| || ||||||| ||| Sbjct 1369110 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 1369169 Query 94326 CTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACT 94367 | || |||| ||| | || || || ||||| || || || Sbjct 1369170 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCT 1369211 Score = 125 bits (138), Expect = 7e-24 Identities = 260/384 (68%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||| ||| | ||||||||| | ||| ||| |||||||| | || | ||||||||| Sbjct 1369826 AGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGACCTTTGGGACTGGGAAC 1369885 Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113 | || || | ||||| | | |||||| | ||| ||||| || || || |||| Sbjct 1369886 CCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTCGTTGCTCCTATGC 1369945 Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173 | || ||| || ||||||| |||||||||||||| | || || || | |||||||| Sbjct 1369946 CTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATGCTTTGAGCCTTACACCTCCA 1370005 Query 95174 ACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT-A 95232 || | ||| | | || || || || || || |||| || ||||| || || | Sbjct 1370006 ACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCA 1370065 Query 95233 CGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACC----AACTGCTACG 95288 || | || || | ||||| | ||| || | ||||||| | |||| Sbjct 1370066 AGGATCTTGTCGAC-ATGGGTCTTTGGTCCGATGCTATGAAGAACCGCATCATTGCT--- 1370121 Query 95289 CGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAA 95348 | ||||| || ||||||||||||| | || || | || |||||||| || ||||| Sbjct 1370122 -GATAACGGTTCTATCCAGAACATCCCCAACATCCCTGCCGAGATCAAGGCTCTGTACAA 1370180 Query 95349 GACCGTGTGGGAGATCCCGCAGCG 95372 ||| ||||||||||| | ||||| Sbjct 1370181 GACTGTGTGGGAGATTTCTCAGCG 1370204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721969376040