Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 122 9e-23 >seq3 Length=8256178 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 6474474 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 6474533 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 6474534 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 6474593 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 6474594 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 6474653 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 6474654 ACGAAAATCTGCATG 6474668 Score = 89.7 bits (98), Expect = 5e-13 Identities = 258/392 (66%), Gaps = 19/392 (5%) Strand=Plus/Minus Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 |||||| ||||||| | | || | | ||| | ||||| || |||| || || Sbjct 2157721 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 2157662 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558 |||| | || || || ||||| || || ||||| |||||||| || |||| ||| | Sbjct 2157661 CGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 2157602 Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617 | | | | |||| | | ||| ||| ||||| | ||| ||| || | Sbjct 2157601 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 2157552 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || |||| || |||||||| |||| | || || || | ||||| ||||||| Sbjct 2157551 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 2157492 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || | | |||| |||||||||| || || || |||||||| | || |||| Sbjct 2157491 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 2157432 Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 | || | | ||| | ||| | ||| || || || || ||| | ||||| || ||| Sbjct 2157431 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 2157373 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | |||||||||||||| ||||||||||| || Sbjct 2157372 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2157341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261165547280