Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 9e-23
>seq3
Length=8256178
Score = 122 bits (134), Expect = 9e-23
Identities = 144/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 6474474 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 6474533
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || ||||| || ||||| ||| || || |
Sbjct 6474534 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 6474593
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 6474594 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 6474653
Query 138601 ACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 6474654 ACGAAAATCTGCATG 6474668
Score = 89.7 bits (98), Expect = 5e-13
Identities = 258/392 (66%), Gaps = 19/392 (5%)
Strand=Plus/Minus
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
|||||| ||||||| | | || | | ||| | ||||| || |||| || ||
Sbjct 2157721 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 2157662
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558
|||| | || || || ||||| || || ||||| |||||||| || |||| ||| |
Sbjct 2157661 CGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 2157602
Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617
| | | | |||| | | ||| ||| ||||| | ||| ||| || |
Sbjct 2157601 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 2157552
Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677
| || |||| || |||||||| |||| | || || || | ||||| |||||||
Sbjct 2157551 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 2157492
Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|| | | |||| |||||||||| || || || |||||||| | || ||||
Sbjct 2157491 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 2157432
Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796
| || | | ||| | ||| | ||| || || || || ||| | ||||| || |||
Sbjct 2157431 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 2157373
Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
| |||||||||||||| ||||||||||| ||
Sbjct 2157372 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2157341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261165547280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |