Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq3 118 1e-21 seq1 118 1e-21 >seq2 Length=8791613 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || || Sbjct 2570134 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 2570193 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| ||||||||||||||| || || |||| Sbjct 2570194 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 2570253 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | ||| || |||| ||| | || |||||||||| || Sbjct 2570254 ACGTTG-TCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 2570312 Query 127096 TTTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 2570313 CTTGACGAAGATCTGCATGG 2570332 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 2569906 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 2569965 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 2569966 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2570025 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| |||| ||| | || ||||| || || || Sbjct 2570026 ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 2570085 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 2570086 TTGACGAAGATTTGCAT 2570102 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||| || | || || || || || || ||||| Sbjct 2569588 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTA 2569646 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | || ||| || || ||||| || || ||| | ||||||||||||||||| Sbjct 2569647 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 2569706 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| || |||||||||||| ||| || ||||| |||| |||| ||||| | Sbjct 2569707 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGATG 2569765 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||||| || | ||| | || |||||||||| Sbjct 2569766 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTCA 2569798 >seq3 Length=8256178 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 6474441 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6474500 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 6474501 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6474560 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | | ||| || Sbjct 6474561 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 6474619 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 6474620 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 6474668 >seq1 Length=11267849 Score = 118 bits (130), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||||||||||||||| || || ||||||||||| Sbjct 6400812 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 6400753 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| | Sbjct 6400752 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 6400693 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || ||||| ||||| || || || ||| ||| ||||| Sbjct 6400692 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 6400656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499617191760