Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 179 5e-40 seq4 86.0 8e-12 >seq3 Length=8256178 Score = 179 bits (198), Expect = 5e-40 Identities = 565/867 (65%), Gaps = 19/867 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| ||| Sbjct 1368633 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 1368692 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || ||||| | | |||| || |||| || || | || Sbjct 1368693 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTATT 1368752 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| ||| || || | || || |||||| ||| | |||||||| Sbjct 1368753 CAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGGA 1368812 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || |||| || |||| || |||| |||||| || || ||| |||||| Sbjct 1368813 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 1368872 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || || || ||| || | |||| ||| || ||||| || Sbjct 1368873 TGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 1368932 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| || | ||||| |||| ||||| || || || ||| ||| || || || || Sbjct 1368933 TGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 1368992 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024 |||| | ||| | |||| || || |||| |||| ||||| |||||||| Sbjct 1368993 TGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 1369049 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 ||| || || | ||||||||||| | || || || ||| | ||||||| |||| Sbjct 1369050 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 1369109 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 1369110 T--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGA 1369167 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | ||| | ||| ||||| | || || || || || || || || | || | || Sbjct 1369168 AACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTACGG 1369226 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 ||| || ||||| || || ||| |||||||||| ||| || || | | || | | Sbjct 1369227 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 1369284 Query 112262 GCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || ||| | | ||| | || ||||| || | || || ||||| || | || Sbjct 1369285 ATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACCCT 1369344 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| || ||| || | |||||||| |||||||| | ||| ||| Sbjct 1369345 TTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCATC 1369404 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || |||||||| || || || ||| | |||| | | |||||| ||||| Sbjct 1369405 CGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTT 1369464 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCC 112466 || ||||| || || | |||| ||| Sbjct 1369465 TGCAACCTTGCCTCCTTGTCTCTGCCC 1369491 Score = 129 bits (142), Expect = 7e-25 Identities = 351/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 101873 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 2158137 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 2158078 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 2158077 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 2158018 Query 101934 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 2158017 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 2157960 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050 ||||||| || || | |||| ||| | | | || || |||||| ||| Sbjct 2157959 GCTTCTATG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 2157901 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 2157900 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 2157841 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 102167 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 2157840 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 2157782 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | |||| ||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 2157781 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 2157724 Query 102228 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 2157723 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 2157665 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||||||||| || ||| || ||||| Sbjct 2157664 TAACGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGC 2157620 >seq4 Length=7997404 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||| || || |||| |||||| || || | || | | | || || Sbjct 1321010 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 1321069 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 ||| ||||||||| | || ||||| ||||||||||| || || | | || || Sbjct 1321070 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 1321129 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || | |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1321130 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1321188 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1321189 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1321248 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333 ||||||| ||||| ||||| | ||||| ||| Sbjct 1321249 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTC 1321279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740855903280