Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=8256178 Score = 107 bits (118), Expect = 2e-18 Identities = 359/558 (64%), Gaps = 3/558 (1%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || || || |||||||| | | || | || |||||||| | | Sbjct 2157616 ACAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2157675 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||| || || | || || | |||||| || |||||||| | || ||||| Sbjct 2157676 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2157735 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||||| || || || ||||||||||| || | | | | ||| | |||| || Sbjct 2157736 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2157795 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| | |||||||| ||||||||| | || || || || || | | || Sbjct 2157796 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 2157855 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || || || |||||| | | || || | || | ||| || | | ||| | Sbjct 2157856 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 2157915 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| || || || || || || ||||| || || || || |||| || || | || Sbjct 2157916 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 2157975 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||| || || | | |||| || || | ||| ||||| || || || || || || Sbjct 2157976 CTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGC 2158035 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCA 19436 || || || | | || || || | || || ||||| || ||| | ||||| Sbjct 2158036 GAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCA 2158095 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || | | ||| || || | ||| | || ||| ||||||| || || |||||||| || Sbjct 2158096 GTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTT 2158155 Query 19497 TTTATACATGTTCCATAT 19514 || ||||| | ||| || Sbjct 2158156 CTTGTACATTTGCCAGAT 2158173 Score = 104 bits (114), Expect = 3e-17 Identities = 528/835 (63%), Gaps = 10/835 (1%) Strand=Plus/Minus Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 |||||||| ||||| ||||| |||| || ||| |||| | |||| || | | |||| Sbjct 1369361 TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 1369302 Query 48063 ACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTA--TTTAGTATATA 48120 | || |||||| ||| | | | ||| || ||||| ||| ||| | | Sbjct 1369301 AGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGA 1369242 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 | ||||||||| || || || | | | | ||||| ||||| ||||| ||||| | Sbjct 1369241 GC--CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 1369184 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | ||| || | | | | || | |||| || | ||| || ||||||||||||| Sbjct 1369183 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 1369124 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 || | || | || | | || || || || |||| || || ||||| || | Sbjct 1369123 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 1369064 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | | || || ||||||||||| | || || || | |||| ||||| || |||| Sbjct 1369063 CGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 1369004 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 | || || || | || | ||||| ||||| | || | | ||| || || ||||| | Sbjct 1369003 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 1368944 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGA 48478 | || |||||||||| || | || ||| ||| | || | || | || | Sbjct 1368943 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCA 1368884 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || |||||||| ||||| || || || | ||||| || |||||||| || || Sbjct 1368883 A--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 1368826 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACA 48598 || || || || || || |||||| | || || || || | || || || Sbjct 1368825 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGG 1368766 Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | || ||||| || || ||||||| | || | || ||| | | || Sbjct 1368765 AGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTT 1368706 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||| || | ||| || ||||| || | || || | || || ||||| | Sbjct 1368705 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGA 1368647 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| || || | ||| |||||||| | || | | | |||||| | || Sbjct 1368646 TCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACA 1368587 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGA 48832 | ||| || |||||||||||||| |||||| ||||| | ||| | ||| Sbjct 1368586 AGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGA 1368532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107401754360