Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 176 1e-38 seq1 118 3e-21 >seq3 Length=8256178 Score = 176 bits (194), Expect = 1e-38 Identities = 264/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| ||||| | ||||| |||||| || ||||| || |||| Sbjct 2157971 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 2157912 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | |||| | ||| || | |||||| Sbjct 2157911 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 2157853 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||| || | ||||||| || |||||| | || ||||| || |||||||||| Sbjct 2157852 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 2157793 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | | || ||| ||||| ||||||||||||| || ||||| || || Sbjct 2157792 GATAAGAACTCTACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 2157733 Query 133544 ttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || |||| | || || ||||| || |||||||| | | ||||| || Sbjct 2157732 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 2157674 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662 | | ||||||||||| || ||||| | ||||||| ||||||||||| |||||| | | Sbjct 2157673 GAGCTTTTCTAACGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGTCT 2157614 Query 133663 ACTTCACTCT 133672 || |||||| Sbjct 2157613 CCTCCACTCT 2157604 Score = 123 bits (136), Expect = 7e-23 Identities = 544/853 (64%), Gaps = 11/853 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| |||||| | |||||| ||||||||| || || |||||| || | ||||| | Sbjct 1369444 CGCAGTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 1369385 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | || || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 1369384 GGTTACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 1369325 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || ||||| ||| || | | || || || |||| | || | Sbjct 1369324 GGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 1369265 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 | ||| || |||| || | ||| | | || |||||||| || ||| || || Sbjct 1369264 CTCTCTCGTACTTTTCGTACAGAGCCTCAAAT--TCGTCACCGTAGCAGTCAGCAAGGCC 1369207 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 |||||| | | ||||| | || | ||| || | ||||||| ||| || Sbjct 1369206 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 1369147 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | |||| ||||| ||| |||| ||||| | || |||||| | ||||| Sbjct 1369146 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 1369087 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 |||||| || || || | ||| || | || | || ||| || || || || || Sbjct 1369086 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGC 1369027 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| | |||| |||||||| || || || |||||||| || ||||| || Sbjct 1369026 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 1368967 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || ||||| |||| ||||| |||||||| |||||||| ||| || | || |||| Sbjct 1368966 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 1368907 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | || | || | | ||||||||||| | |||| || ||||| || | Sbjct 1368906 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGGCAC 1368848 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | |||| | | ||||| ||||| || || | ||| | || ||| Sbjct 1368847 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1368788 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||||| |||| || || |||||||||| || || |||||||| | | Sbjct 1368787 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1368728 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGA 156398 | |||| | ||||| | |||||||||| | ||||| || |||| || Sbjct 1368727 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 1368668 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 | || | || ||| | ||| ||||||||| || ||||| |||| || ||||| Sbjct 1368667 TTCCA-ACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 1368609 Query 156459 CGCAGAAGGTATG 156471 | || | ||||| Sbjct 1368608 TGTAGCAAGTATG 1368596 >seq1 Length=11267849 Score = 118 bits (130), Expect = 3e-21 Identities = 382/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| |||| || Sbjct 8505224 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 8505165 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | |||||| |||||||||||||| || ||||| Sbjct 8505164 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGCTCCATCTCTCCGAAT 8505105 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || || |||||||| || || | ||||||| ||||||| || || | | | | ||| Sbjct 8505104 CGCAGGCCACCATCTCGGGCACGACCCTCGACAGGCTGCCGGGTCATAATCTGAACGGGA 8505045 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| |||| ||||| || ||||| |||||| ||| Sbjct 8505044 CCACGGGCACGAGCGTGGATCTTGTCATCCACCATGTGACGAAGACGTTGGTAGTATGTA 8504985 Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || |||| ||||| || || | | | | ||| || || | || ||||| || | Sbjct 8504984 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 8504927 Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||||| ||||| ||| || | | ||||| | | | | Sbjct 8504926 CAAAACCTCGAGATTGGTAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 8504870 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821 ||| | | || || |||| || | | |||| | | | || || | | Sbjct 8504869 TGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTACTCA 8504810 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 |||| ||| ||| ||||| || ||||||||| |||||||| || || ||||||| Sbjct 8504809 AAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGA 8504750 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTT 251940 | ||||| || |||| || || |||| |||||||||| | || ||| | Sbjct 8504749 TAATGTCAGGAGTCAGACCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAACA 8504691 Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| ||||||||||| |||||| |||||||| Sbjct 8504690 CCGATTGTACCCTTTTGACCGTGACGAGAGGCGAACTTGTCACCAAT 8504644 Score = 116 bits (128), Expect = 1e-20 Identities = 204/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 || |||||| | | ||||| || || |||||||| ||||||||| || || || || Sbjct 2955838 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 2955779 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || |||||||| ||||| | |||||| |||| || |||||||| | ||| || Sbjct 2955778 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGT 2955719 Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747 || || | | | ||| |||| ||||||||||| || ||||| |||| || ||| Sbjct 2955718 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 2955659 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 ||| || || ||||| || | | || | || | || || |||||||| || ||| | Sbjct 2955658 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGAT 2955599 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || | || | |||| |||||||| || | | | |||||||| || Sbjct 2955598 TTGTTGACCGACAAGCGCAGTCATTTGCGAAATGTTGATAGAAGAACCCTTGGAACC 2955542 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 2956611 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 2956555 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||| | ||||||||||| || || || | Sbjct 2956554 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 2956495 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 2956494 ACACCAACCATTTCACCAGG 2956475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813847325063