Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-21 seq3 113 6e-19 seq1 104 3e-16 >seq4 Length=7997404 Score = 120 bits (132), Expect = 4e-21 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||||||||| |||||||| || ||||| |||| |||||| | || |||||||||||| Sbjct 1681041 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1680982 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||| | |||||||| |||||||||||||| || || Sbjct 1680981 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1680941 >seq3 Length=8256178 Score = 113 bits (124), Expect = 6e-19 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| || || || |||||||| |||| |||||||| Sbjct 1368999 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 1368940 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||| | ||| || | ||| ||| ||||| Sbjct 1368939 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 1368880 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 1368879 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1368820 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || || ||||| || || || || || | || || Sbjct 1368819 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 1368760 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||| | || ||||| |||| | |||||| || ||| || Sbjct 1368759 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 1368700 Score = 105 bits (116), Expect = 8e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | |||||| |||||| |||||||||||||| | || ||||| Sbjct 2157323 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 2157382 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | || Sbjct 2157383 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 2157442 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || || ||||| || ||||||||||| ||||||| || ||||||||||| Sbjct 2157443 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 2157502 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| | | |||||| | ||| || ||||| ||| ||| Sbjct 2157503 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 2157562 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 2157563 ATGT-CCTGG 2157571 Score = 91.5 bits (100), Expect = 2e-12 Identities = 198/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| || | ||||| |||| || || ||||||||||| ||||| Sbjct 2157637 ACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTT 2157696 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| |||||| | || || || ||| ||| ||||| ||||| ||||| ||| Sbjct 2157697 CTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCA 2157754 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCC 869356 || | | || |||| || ||| || || | || | | |||||| || ||| Sbjct 2157755 AAAGCAACAAGACGCTGAGCGAAG--GTAGA-GTTCTTATCCTGGATCCATCGGATGGCC 2157811 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTT 869415 || || ||||| || | | | || | ||||| | |||| ||||||| || | Sbjct 2157812 CAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTAC-G 2157870 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| |||||||||| ||||| ||||| ||||| || || || || Sbjct 2157871 CTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTC 2157918 >seq1 Length=11267849 Score = 104 bits (114), Expect = 3e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || ||||| ||||| | ||| | || ||||||||| Sbjct 5419017 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 5419076 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 5419077 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 5419136 Query 19167 AAGGGATTCGAG 19178 |||| |||||| Sbjct 5419137 AAGGCCTTCGAG 5419148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107122869128083