Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3 147 3e-29
seq4 120 5e-21
>seq3
Length=8256178
Score = 147 bits (162), Expect = 3e-29
Identities = 236/331 (71%), Gaps = 11/331 (3%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| || | ||||| ||||| || || ||||||||||| |||||
Sbjct 2157637 ACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTT 2157696
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCA 794457
||||||||| ||||||| | | || || ||| ||| ||||| ||||| ||||| |||
Sbjct 2157697 CTTGAGCCAGAAGATGGAA--GCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCA 2157754
Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGC 794516
|| | || || |||| || || || || | || | | |||||| || ||
Sbjct 2157755 AAAGCAACAAGACGCTGAGCGAAGGT----AGAGTTCTTATCCTGGATCCATCGGATGGC 2157810
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCT 794575
||| || ||||| || | | | || | ||||| | |||| ||||||| || |
Sbjct 2157811 CCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG 2157870
Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635
|| | | |||||||||| |||||| ||||||||||| ||||| || || ||||||||||
Sbjct 2157871 -CTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2157929
Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || || ||||||||| ||||| |||||
Sbjct 2157930 TCTCCATCATGATCTGGAAACCATAGAAGCA 2157960
Score = 107 bits (118), Expect = 3e-17
Identities = 166/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|||||| |||||| |||||||||||||| | || ||||| |||||| | |||
Sbjct 2157341 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 2157400
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036
||||||| | | ||| ||||||| ||||| | | || || || || ||||||
Sbjct 2157401 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 2157460
Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095
||||| |||||||| ||||||| || ||||||||||| || || || ||| || |
Sbjct 2157461 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 2157519
Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
||| | | |||||| | ||| || ||||| ||| |||| || | |||||
Sbjct 2157520 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 2157571
>seq4
Length=7997404
Score = 120 bits (132), Expect = 5e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712
||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | |||
Sbjct 1681041 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1680982
Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 1680981 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1680941
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 5058664 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5058605
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | |||||| ||||| ||||
Sbjct 5058604 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 5058573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916225231462361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |