Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 147 3e-29 seq4 120 5e-21 >seq3 Length=8256178 Score = 147 bits (162), Expect = 3e-29 Identities = 236/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| || | ||||| ||||| || || ||||||||||| ||||| Sbjct 2157637 ACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTT 2157696 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||| ||||||| | | || || ||| ||| ||||| ||||| ||||| ||| Sbjct 2157697 CTTGAGCCAGAAGATGGAA--GCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCA 2157754 Query 794458 AAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGC 794516 || | || || |||| || || || || | || | | |||||| || || Sbjct 2157755 AAAGCAACAAGACGCTGAGCGAAGGT----AGAGTTCTTATCCTGGATCCATCGGATGGC 2157810 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCT 794575 ||| || ||||| || | | | || | ||||| | |||| ||||||| || | Sbjct 2157811 CCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG 2157870 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | |||||||||| |||||| ||||||||||| ||||| || || |||||||||| Sbjct 2157871 -CTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGT 2157929 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||| ||||| ||||| Sbjct 2157930 TCTCCATCATGATCTGGAAACCATAGAAGCA 2157960 Score = 107 bits (118), Expect = 3e-17 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 |||||| |||||| |||||||||||||| | || ||||| |||||| | ||| Sbjct 2157341 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 2157400 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036 ||||||| | | ||| ||||||| ||||| | | || || || || |||||| Sbjct 2157401 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 2157460 Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095 ||||| |||||||| ||||||| || ||||||||||| || || || ||| || | Sbjct 2157461 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 2157519 Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 ||| | | |||||| | ||| || ||||| ||| |||| || | ||||| Sbjct 2157520 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 2157571 >seq4 Length=7997404 Score = 120 bits (132), Expect = 5e-21 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712 ||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | ||| Sbjct 1681041 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1680982 Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||| | |||||||| |||||||||||||| || || Sbjct 1680981 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1680941 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 5058664 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5058605 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||| ||||| |||| Sbjct 5058604 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 5058573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916225231462361