Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 7e-15
>seq1
Length=11267849
Score = 98.7 bits (108), Expect = 7e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| | |||| || |||||||| |||||||||||| | |||||||||
Sbjct 2954285 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 2954344
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399
|| || |||||| |||| | || || | ||| |||| || ||||| ||||
Sbjct 2954345 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 2954396
Score = 93.3 bits (102), Expect = 3e-13
Identities = 216/326 (66%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205
|||| |||| |||||| || | ||| | | || ||||| || || |||||||||
Sbjct 2681760 TTATGCTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGACGGTTGTCGAAATCTTCA 2681819
Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265
|| ||||| | ||| | || | |||| | || | ||| | || || |||| |
Sbjct 2681820 CCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTA 2681879
Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325
| |||| ||||| ||| |||||||| | ||| || || || || || ||
Sbjct 2681880 AGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCC 2681939
Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385
|| || || |||||||| || |||| || ||||| || || || || || ||||
Sbjct 2681940 TCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGG 2681999
Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445
| ||| || ||||| || || || ||||| || || || || | || || |||||
Sbjct 2682000 AGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGAGAGTCGTTG 2682059
Query 282446 AAATATGCAGGAACAGTAATAACGGC 282471
|| || ||||| || || | ||||||
Sbjct 2682060 AAGTAGGCAGGGACGGTGACAACGGC 2682085
Score = 89.7 bits (98), Expect = 4e-12
Identities = 242/368 (66%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
||||| |||||||| | ||| || ||||| ||||| || || || || | |||||||
Sbjct 2680544 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 2680603
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | || | |||| || || || || ||| | || |||
Sbjct 2680604 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 2680663
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||| | | |||||| || ||| || || || || | || | || || |
Sbjct 2680664 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 2680723
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || ||||| || ||||| | || | |||||||| |||||||||||
Sbjct 2680724 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 2680783
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | ||| ||||| ||||| | || || | || | ||| | || | | ||
Sbjct 2680784 GTCTCGATACCGAGAGAGAGAGGGGCAACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 2680843
Query 281739 C-ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | || | |||| |||||||| || || | ||| ||||| || |||||||| |||
Sbjct 2680844 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 2680903
Query 281798 TCAGGATT 281805
||||| ||
Sbjct 2680904 TCAGGGTT 2680911
Score = 86.0 bits (94), Expect = 5e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| ||||||||||| | ||||||||||| |||||| | ||| |||| || | || |||
Sbjct 2955728 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 2955787
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239
||||| |||||||| ||||| || | | |||||| ||||||||
Sbjct 2955788 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 2955834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740620629940974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |