Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 147 3e-30
>seq3
Length=8256178
Score = 147 bits (162), Expect = 3e-30
Identities = 372/559 (67%), Gaps = 10/559 (2%)
Strand=Plus/Plus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
||||| ||||| || || ||||| || | | ||| | ||||||||||| | ||
Sbjct 2157617 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATGAGCTCGTTAGAAAAGCTCAGA 2157676
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736
|||||||| || |||||||| |||||||| || |||| |||||| | || ||||||
Sbjct 2157677 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAG 2157736
Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGT 39793
|| || || || || ||||| |||||||| | || || | | | | | || ||
Sbjct 2157737 ATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTGG 2157796
Query 39794 ATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||| | || |||||||| || ||||| | ||||| || || || | || ||
Sbjct 2157797 ATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 2157855
Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
||||| | |||| | || || || | || ||||| || | || ||
Sbjct 2157856 GAAGAGGT-ATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2157914
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971
|||| || |||||||| || ||| ||||| || || || || |||| || || | |
Sbjct 2157915 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2157974
Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031
| || ||||| | |||| || | | ||| ||||| || || || || || |
Sbjct 2157975 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2158034
Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCC 40088
| || || || | | || || || |||| || || | |||||| || ||||
Sbjct 2158035 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2158094
Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|||| | || ||| || || | ||| | || ||||||||||| || || ||||||||||
Sbjct 2158095 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2158154
Query 40149 TTTTGTACATGTTCCATAT 40167
| |||||||| | ||| ||
Sbjct 2158155 TCTTGTACATTTGCCAGAT 2158173
Score = 123 bits (136), Expect = 3e-23
Identities = 589/925 (64%), Gaps = 16/925 (2%)
Strand=Plus/Minus
Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-TATTGTATTATCTCTGTACA 69335
|| || || || ||||| || ||||||| || ||| |||| || ||||| || ||
Sbjct 1369478 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1369420
Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395
|| || | | ||| || || || || | || |||||||| || ||| ||
Sbjct 1369419 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1369360
Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAAC 69455
|||||| || || || || | || || || |||| | || | ||| | | |||||
Sbjct 1369359 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1369300
Query 69456 GACCCTAGCATTTATTACGGTCTTGTAACGCTT---CTCTTTTTCATATTGT--GTATAT 69510
| ||| || || | |||| || ||| |||| | || || | | ||| |
Sbjct 1369299 TTTCTGAGCCTTGATA---GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1369243
Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570
|||| || ||||| || || | ||| | | ||||| ||||| || || |||||
Sbjct 1369242 AGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATG 1369185
Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630
| | ||| | | | || || || ||||| || ||||| || ||||||||||||
Sbjct 1369184 AGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCT 1369125
Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690
| || || || | | | || || || || ||| ||| ||||| || |||
Sbjct 1369124 AAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAAC 1369065
Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750
|| | | || | ||||||||||| || || || || | | | || ||||| || ||
Sbjct 1369064 TCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTA 1369005
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| ||||| || | ||| | |||||||| || | || | |||||| |||| |||||
Sbjct 1369004 CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCG 1368945
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| || ||||||| || || | || ||| || | || || || | | | |
Sbjct 1368944 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTT 1368886
Query 69871 -AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| || || || || ||||| || || || | |||||| || | || || || ||
Sbjct 1368885 CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGAT 1368826
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTAT 69989
||| || ||||| || || |||| | || ||| || || || | ||| | |||
Sbjct 1368825 ACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGG 1368766
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || || || ||||| || || ||| |||||||| | || || | || ||
Sbjct 1368765 AGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTT 1368706
Query 70050 GTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCA 70108
|||||| || | | || ||||| ||| | ||||| | ||||| ||||| |
Sbjct 1368705 GTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGA 1368647
Query 70109 ACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168
||||||||| || || || | |||| | || | | || ||||||| | ||
Sbjct 1368646 TCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACA 1368587
Query 70169 GAGTTTTAAACCCAAAATAGTTGTA 70193
||| || ||||||||||||||
Sbjct 1368586 AGGTTCGGAAGCCAAAATAGTTGTA 1368562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686907091314360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |