Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 seq4 84.2 3e-11 >seq3 Length=8256178 Score = 174 bits (192), Expect = 2e-38 Identities = 957/1512 (63%), Gaps = 63/1512 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 1368633 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 1368692 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| |||| || || | Sbjct 1368693 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 1368750 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 1368751 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 1368810 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 1368811 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1368870 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || ||| | | |||| | ||| || || || Sbjct 1368871 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1368930 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | ||||| |||| ||||| || || || ||| ||| || || || Sbjct 1368931 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1368990 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| ||||| |||||| Sbjct 1368991 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGG 1369047 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || || || ||| | ||||||| ||| Sbjct 1369048 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 1369107 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 1369108 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 1369165 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 | ||| | ||| ||||| | || || || || || ||||| || | || | Sbjct 1369166 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 1369224 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 1369225 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 1369282 Query 104870 GTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | || ||| | | ||| | || ||||| || | || || ||||| || | | Sbjct 1369283 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACC 1369342 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||| || | |||||||| |||||||| | ||| | Sbjct 1369343 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCA 1369402 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| || || || || ||| | |||| | | |||||| |||| Sbjct 1369403 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 1369462 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAA 105098 | || ||||| || || | |||| || ||| |||| ||| | | | Sbjct 1369463 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGATGC--TTGCTA 1369520 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 ||| || | | || || ||||| || || || ||| | || | |||| Sbjct 1369521 CGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACA 1369573 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 105218 | || || || ||||| || | |||||||| || ||| | |||| Sbjct 1369574 AGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACC 1369633 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC---G 105275 | || |||||||| ||||| || |||||||| |||| | ||||| | || | Sbjct 1369634 GACCCATTGGTCTTGGTGTGCAAGGTCTCGCTGATG---CCTTTCTTGCCCTCCGCATGC 1369690 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 | ||||| || || || || | || || || || |||||||| || |||| Sbjct 1369691 CCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACG 1369750 Query 105336 CCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 | || ||| | | || || | | | || ||| || ||||| || ||||| | Sbjct 1369751 CTGCCCTTACTACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTCAA 1369808 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AA 105450 ||| || || || || | || | || || || || |||||| | | || || | Sbjct 1369809 GGGCTCCCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGA 1369868 Query 105451 GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 ||| | ||||||||| | ||| || ||||| | ||| | || ||||| Sbjct 1369869 CCTT---TGGGACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAG 1369925 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 ||| ||| | ||||| ||||| || ||| ||| | || || | || || || ||||| Sbjct 1369926 TCTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATG 1369985 Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630 |||||| || ||||| | |||||||| | | || ||| || || ||||| | | Sbjct 1369986 CTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGT 1370045 Query 105631 TGTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 |||||| | || |||| |||| || || || ||||| |||||| | | ||| Sbjct 1370046 TGTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTAT 1370102 Query 105688 GAAGGATCTCAT 105699 |||| | | ||| Sbjct 1370103 GAAGAACCGCAT 1370114 Score = 129 bits (142), Expect = 7e-25 Identities = 351/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 2158137 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 2158078 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 2158077 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 2158018 Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 2158017 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 2157960 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||||| | ||| |||| ||| | | | || || |||||| ||| Sbjct 2157959 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 2157901 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 2157900 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 2157841 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 2157840 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 2157782 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||| ||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 2157781 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 2157724 Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 2157723 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 2157665 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||||||||| || ||| || ||||| Sbjct 2157664 TAACGAGCTCATTTCTCGTGACGAGGGTCTTCACACCGACTTTGC 2157620 >seq4 Length=7997404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 179/262 (68%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| || || |||| |||||| || || | || | | | || || Sbjct 1321010 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 1321069 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| ||||||||| | || ||||| ||||||||||| || || | | || || Sbjct 1321070 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 1321129 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || | |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1321130 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1321188 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1321189 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1321248 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 1321249 ---TCTCAGGCTGCTTCAAGAA 1321267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259349138760