Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 140 8e-28 seq2 134 3e-26 seq1 111 4e-19 >seq3 Length=8256178 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| || ||||| || || |||| ||||| ||| || || Sbjct 6474446 ACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 6474505 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||||||||| || ||||| || || ||||| Sbjct 6474506 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 6474565 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || || |||||||| || | ||||| || | Sbjct 6474566 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAG 6474625 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||||| | || || | ||| | ||||| Sbjct 6474626 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6474667 Score = 95.1 bits (104), Expect = 3e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 193527 TCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGCCAA 193586 || ||||||| ||||| || | || ||| | || || | |||||| | |||| Sbjct 1369361 TCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAA 1369302 Query 193587 AGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTACAGT 193646 |||| ||||| || | | | | | |||| || || |||||||||||||||||||| Sbjct 1369301 AGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGA 1369242 Query 193647 TCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAGAGA 193706 ||||||| || | |||||| || | || || || ||| || ||||| | |||| Sbjct 1369241 GCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGA 1369182 Query 193707 CTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGCGTAG 193766 |||| || || | || || || | ||||||||| || |||| |||||| || || Sbjct 1369181 GTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAAG 1369122 Query 193767 AAAAG 193771 || || Sbjct 1369121 AACAG 1369117 >seq2 Length=8791613 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || |||| ||||| |||| | || Sbjct 2569881 ACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 2569940 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || | ||| || || || || || || || Sbjct 2569941 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCC 2570000 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | || || || | Sbjct 2570001 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAG 2570060 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | |||||| Sbjct 2570061 GGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2570102 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || |||| |||||||||| | || Sbjct 2570109 ACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 2570168 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || | ||| || || || || || || || Sbjct 2570169 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCC 2570228 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||| || || || | || || || | Sbjct 2570229 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAG 2570288 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| ||||| || || | ||| | ||||| Sbjct 2570289 GGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2570330 >seq1 Length=11267849 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | |||| ||||| || |||||||| || |||||||| Sbjct 6400844 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6400785 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || || || || || || || |||||||| |||||||| ||| ||| ||| Sbjct 6400784 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6400725 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| || | || || || | ||||| ||||||||||||| || || | ||| Sbjct 6400724 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6400666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528159418106