Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 3e-20
seq2 105 2e-17
seq1 98.7 2e-15
>seq3
Length=8256178
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| || ||||||||||| ||| | || | |||||
Sbjct 6474455 GAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 6474514
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || |||||||| | ||||||||||| | ||| || ||||| ||
Sbjct 6474515 CTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 6474574
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 6474575 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 6474634
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| ||||| ||||| | ||||||
Sbjct 6474635 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6474667
>seq2
Length=8791613
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || |||||||||||||||| | || | |||||
Sbjct 2570118 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATC 2570177
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | ||| || ||||| ||
Sbjct 2570178 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 2570237
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || ||||| | || | | || || ||| || || || ||||||||
Sbjct 2570238 CTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGT 2570297
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | ||||| ||||||| ||||||
Sbjct 2570298 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2570330
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||
Sbjct 2569890 GAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 2569949
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || |||||||| || | | |||||| || | | ||| || ||||| ||
Sbjct 2569950 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTC 2570009
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| | || | | |||| || ||| || || || || || ||
Sbjct 2570010 CTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGT 2570069
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| ||||| ||||||| |||||
Sbjct 2570070 CTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2570102
>seq1
Length=11267849
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | |||| ||||| || || || |||||||||||
Sbjct 6400844 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 6400785
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | |||||| |||| | ||| || ||||| || || || || |||||| | ||
Sbjct 6400784 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6400725
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| | |||| ||| ||| || || || || || || |||||||| || |||||||||||
Sbjct 6400724 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 6400666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153817858117529
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |