Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25] 199 sequences; 36,667,552 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 154 4e-32 seq2 147 5e-30 seq1 140 8e-28 >seq3 Length=8256178 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 6474664 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 6474605 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 6474604 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 6474545 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 6474544 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 6474485 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 6474484 CAGAAGGAGTCCACCCTTCA-CTTG 6474461 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| || ||||| || ||||| ||| || ||| ||||| |||||||| Sbjct 1369397 CCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 1369341 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238 |||| ||| || || |||||||| | ||| |||| || ||||| | ||| Sbjct 1369340 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGAC 1369281 Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297 || | | ||| ||||| | ||||||||||| || |||| ||||||||| ||||| Sbjct 1369280 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 1369223 Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 || ||| |||| || || ||||| ||||| | ||| |||||| || || || | Sbjct 1369222 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 1369164 Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379 | ||| | ||||||||||| || Sbjct 1369163 TCGACACGCTTCATGAAAAGATC 1369141 >seq2 Length=8791613 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || |||||||||||||| || || ||| Sbjct 2570099 CAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCCGAC 2570040 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| || ||||| Sbjct 2570039 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 2569980 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 2569979 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 2569920 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 2569919 CAGAAGGAGTCGACTCTCCACCTCGT 2569894 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || ||||||||||| || || || Sbjct 2570327 CAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCTGAT 2570268 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || |||||||| || ||||| Sbjct 2570267 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 2570208 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || |||||||| || |||||||| ||||| | || || ||||||| ||| || Sbjct 2570207 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATC 2570148 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 2570147 CAGAAGGAGTCGACTCTCCACCTCGT 2570122 >seq1 Length=11267849 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || || |||||||| Sbjct 6400665 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 6400724 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| | Sbjct 6400725 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 6400784 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 6400785 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 6400844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728130861606