Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000599445.1_202014-03-25]
199 sequences; 36,667,552 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 4e-32
seq2 147 5e-30
seq1 140 8e-28
>seq3
Length=8256178
Score = 154 bits (170), Expect = 4e-32
Identities = 158/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 6474664 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 6474605
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 6474604 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 6474545
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 6474544 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 6474485
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 6474484 CAGAAGGAGTCCACCCTTCA-CTTG 6474461
Score = 84.2 bits (92), Expect = 5e-11
Identities = 182/263 (69%), Gaps = 12/263 (5%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| || ||||| || ||||| ||| || ||| ||||| ||||||||
Sbjct 1369397 CCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 1369341
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238
|||| ||| || || |||||||| | ||| |||| || ||||| | |||
Sbjct 1369340 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGAC 1369281
Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297
|| | | ||| ||||| | ||||||||||| || |||| ||||||||| |||||
Sbjct 1369280 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 1369223
Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357
|| ||| |||| || || ||||| ||||| | ||| |||||| || || || |
Sbjct 1369222 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 1369164
Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379
| ||| | ||||||||||| ||
Sbjct 1369163 TCGACACGCTTCATGAAAAGATC 1369141
>seq2
Length=8791613
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || |||||||| || || |||||||||||||| || || |||
Sbjct 2570099 CAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCCGAC 2570040
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || |||||||| || |||||
Sbjct 2570039 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 2569980
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || |||||||| || |||||||| ||||| | || || |||| || ||| ||
Sbjct 2569979 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 2569920
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 2569919 CAGAAGGAGTCGACTCTCCACCTCGT 2569894
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || || ||||||||||| || || ||
Sbjct 2570327 CAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCTGAT 2570268
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| |||||||||||||| || || |||||||| || |||||
Sbjct 2570267 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAGCAG 2570208
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || |||||||| || |||||||| ||||| | || || ||||||| ||| ||
Sbjct 2570207 CGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAACATC 2570148
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 2570147 CAGAAGGAGTCGACTCTCCACCTCGT 2570122
>seq1
Length=11267849
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || || ||||||||
Sbjct 6400665 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 6400724
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| |
Sbjct 6400725 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 6400784
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 6400785 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 6400844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203728130861606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |