Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq193 116 4e-21 >seq193 Length=35663 Score = 116 bits (128), Expect = 4e-21 Identities = 203/295 (69%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || ||||||||||| ||| ||| |||||||||| ||||||||||| Sbjct 4364 GGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCA 4423 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 ||||| || || || |||||||| || || | || || || || || |||||| | Sbjct 4424 TGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAATCGCT 4483 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 | | ||||| || || |||||||||||| || ||||| || || | || || | Sbjct 4484 CAACAAGATTCTCATTGACGATGCCGTCGGAGGCAGCGAAGAAAGCAAGAATGTGGGAGA 4543 Query 17406 TGAAATATTTTTCGTCCGGTGTAA---GAACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462 |||| |||| ||||| | || | | | |||||| | | ||| ||||| | || Sbjct 4544 TGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGAT 4603 Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | | || || | ||||| || ||| ||||||| || ||||| | ||| || Sbjct 4604 CGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATTTGCCAGAT 4658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539978160920