Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq193 118 1e-21 >seq193 Length=35663 Score = 118 bits (130), Expect = 1e-21 Identities = 365/563 (65%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||| || || || || || | || || ||||| ||||| | Sbjct 4099 AGACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTC 4158 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| | |||||| || | |||||| | || ||| Sbjct 4159 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAG 4218 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||||||||| | |||||||| | | || | ||| | |||| | |||| Sbjct 4219 AAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCC 4278 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| |||| || || || | | || ||| || || || | ||| Sbjct 4279 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 4338 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAACTG 16495 || || | | | | ||| | || | || || ||||| || || | | Sbjct 4339 TTGAAGAGGTA---TGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAG 4395 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| ||||| |||||||| || ||||| || |||||||||||||||||||| Sbjct 4396 TATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCG 4455 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || || || ||||| || | || |||||||| ||||| ||||| Sbjct 4456 GGGATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAG 4515 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATA 16672 ||||| || || || | ||||| ||||| |||| ||||| || || | | | Sbjct 4516 GCAGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTG 4575 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| || | | ||| ||||| | ||| | || || | ||||| ||| ||| || Sbjct 4576 TTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCT 4635 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||||||| ||| || Sbjct 4636 GCCTTCTTGTACATTTGCCAGAT 4658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408844761080