Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq193 118 1e-21
>seq193
Length=35663
Score = 118 bits (130), Expect = 1e-21
Identities = 365/563 (65%), Gaps = 9/563 (2%)
Strand=Plus/Plus
Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258
||||| || |||||| || || || || || | || || ||||| ||||| |
Sbjct 4099 AGACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTC 4158
Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318
| || ||||| || || ||||| | |||||| || | |||||| | || |||
Sbjct 4159 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAG 4218
Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378
|| ||||||||||| | |||||||| | | || | ||| | |||| | ||||
Sbjct 4219 AAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCC 4278
Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438
| |||||| |||| || || || | | || ||| || || || | |||
Sbjct 4279 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 4338
Query 16439 TTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAACTG 16495
|| || | | | | ||| | || | || || ||||| || || | |
Sbjct 4339 TTGAAGAGGTA---TGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAG 4395
Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555
|| |||| ||||| |||||||| || ||||| || ||||||||||||||||||||
Sbjct 4396 TATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCG 4455
Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615
| || || || || || ||||| || | || |||||||| ||||| |||||
Sbjct 4456 GGGATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAG 4515
Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATA 16672
||||| || || || | ||||| ||||| |||| ||||| || || | | |
Sbjct 4516 GCAGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTG 4575
Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732
| ||| || | | ||| ||||| | ||| | || || | ||||| ||| ||| ||
Sbjct 4576 TTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCT 4635
Query 16733 GCCTTTTTATACATTTTCCAAAT 16755
||||| || ||||||| ||| ||
Sbjct 4636 GCCTTCTTGTACATTTGCCAGAT 4658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511408844761080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |