Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq193 233 2e-56 seq496 129 6e-25 seq199 109 6e-19 >seq193 Length=35663 Score = 233 bits (258), Expect = 2e-56 Identities = 397/564 (70%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 4658 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 4599 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750 |||||||| | | | ||||||| | || |||| | || |||||| | |||||| Sbjct 4598 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 4541 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 ||| | || || || ||||| ||| ||||||||||||||| |||||||| || |||| Sbjct 4540 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 4481 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| ||||| ||| | ||||||| || |||||||| || || |||||| | Sbjct 4480 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 4421 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 |||||||| | ||||| |||| || || ||||||||| || ||| | | | || Sbjct 4420 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 4361 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | | | | | | || |||||| | || || || || ||| || | |||||| Sbjct 4360 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 4304 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046 | || ||||| | || |||||| | || || | | |||||| |||| || || Sbjct 4303 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTT 4245 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||| ||||| ||||||| || || || |||| || |||||| Sbjct 4244 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 4185 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || ||||||||||| || |||| || ||||||||||| || | || ||| Sbjct 4184 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAG 4125 Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190 ||||| || ||||||||||||| Sbjct 4124 GGTCTTCACACCGACTTTGCCTGT 4101 >seq496 Length=401694 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | | Sbjct 192729 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 192788 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||| ||||| ||| | Sbjct 192789 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 192848 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 192849 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 192908 Query 40879 G 40879 | Sbjct 192909 G 192909 >seq199 Length=44064 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| |||||||||| ||||| |||| || || || ||||| || Sbjct 8515 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAG 8456 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||| | |||||||||||||||||||||| |||| || || Sbjct 8455 GATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCA 8406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213603431440