Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq109 152 7e-32
seq193 136 5e-27
>seq109
Length=515286
Score = 152 bits (168), Expect = 7e-32
Identities = 626/973 (64%), Gaps = 18/973 (2%)
Strand=Plus/Minus
Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763
|| || || || ||||| || ||||||| || || |||| || || ||||||||
Sbjct 356697 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 356638
Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823
|| || | |||||| || | || | ||| |||||||| || || ||||
Sbjct 356637 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATCC 356578
Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883
|| || || || || || | || || || |||| | || | ||| || | ||| | |
Sbjct 356577 TTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA-G 356519
Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATAT 71937
|| ||||||| || | |||| | ||| ||||| ||||| | | ||| |
Sbjct 356518 TTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 356462
Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACAT 71996
| | || || ||||| || | ||| | || ||||| ||||| || || |||||
Sbjct 356461 AGCC--TCAAATTCGTCACCGTA-GCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 356405
Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056
| | ||| || || | | || || ||||| || |||||||| |||||||||||
Sbjct 356404 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 356345
Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116
|| || || || | | | |||||| || || ||||||| ||||| |||||
Sbjct 356344 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 356285
Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176
| | | | || | ||||| ||||| | ||| ||||| | | || || || |||||
Sbjct 356284 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 356225
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|| ||||| || | ||| | ||| ||||| || | || | || ||| |||| |||||
Sbjct 356224 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 356165
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||||| | ||||||||| |||| ||| || ||| ||||||| || | | | |
Sbjct 356164 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 356106
Query 72297 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355
| | || || || || ||||| || || || | || || || | ||||| ||||
Sbjct 356105 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 356046
Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415
| || || || || || ||| |||| | || || || || || | || | |
Sbjct 356045 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 355986
Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475
||| || || || ||||| || || || || || || | || |||| || |
Sbjct 355985 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 355926
Query 72476 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATT 72534
|||| ||||| | | || ||||| || | ||||| || ||||| |||||
Sbjct 355925 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 355867
Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594
| ||||||||| || | ||| | || ||| | || | | |||||| ||| | |
Sbjct 355866 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 355807
Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654
|| ||| || |||||||||||||| ||||| || || || | ||| | || | |
Sbjct 355806 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 355747
Query 72655 AGTTTATCCTTAT 72667
|||| || ||||
Sbjct 355746 AGTTCCTCTTTAT 355734
>seq193
Length=35663
Score = 136 bits (150), Expect = 5e-27
Identities = 368/559 (66%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123
||| || || ||| ||| ||||||||||| | | ||| | ||||| ||||| | ||
Sbjct 4101 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 4160
Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183
|| ||||| ||||||||||| || ||||| || || || ||||| | || |||||
Sbjct 4161 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 4220
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 42240
||| || || || || ||||| |||| ||| | || | | | | | || ||
Sbjct 4221 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 4280
Query 42241 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299
||||| | || |||||||| ||||||||| | ||||| || || || | ||| |
Sbjct 4281 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 4339
Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359
| ||||| || | | | || || | || |||||||| | || ||
Sbjct 4340 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 4399
Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419
|||| || || ||||| || || ||||| || || ||||| |||| ||||||| |
Sbjct 4400 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 4459
Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479
||| || || | ||||| ||| | | ||| || || || || ||||| ||| |
Sbjct 4460 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 4519
Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCC 42536
| || || || | | || || || |||| ||||| | || ||| || ||||
Sbjct 4520 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 4579
Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
| || | || ||| || || | ||| | || || | ||||| || || || |||||||
Sbjct 4580 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 4639
Query 42597 TTTTATACATATTCCAGAT 42615
| || ||||| | ||||||
Sbjct 4640 TCTTGTACATTTGCCAGAT 4658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671131909750440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |