Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq193 273 3e-68
seq109 114 2e-20
>seq193
Length=35663
Score = 273 bits (302), Expect = 3e-68
Identities = 575/847 (68%), Gaps = 29/847 (3%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||||||||| ||||| | || ||| |||||||
Sbjct 4658 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 4599
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | || |||||| | |||| | | || || ||
Sbjct 4598 TCCAAGGATCTCCACGACTGGAACAACCGATTGACTTCAGACGAGCAATACTTCATCTCC 4539
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| | || ||||| || | |||||| || |||||||| || ||||| ||||| ||
Sbjct 4538 CACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAG-CG 4480
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256
|||| ||| | || || |||| ||| ||||| || || ||||| |||||||
Sbjct 4479 ATTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTATGGTTTCCAGATCATGA 4421
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG- 125315
| |||||| | ||||| |||| ||||| || || || | ||||| || ||
Sbjct 4420 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 4361
Query 125316 --CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373
|| |||| | || ||||| ||||| | ||||| | || | || || || ||||
Sbjct 4360 CCCAGCGTACATAC---CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 4304
Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433
| | |||| || || |||||| | || | || ||| | | ||| | | || || |
Sbjct 4303 CGGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTTG 4244
Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493
| || || ||||| ||||| |||||||| ||| ||||| ||||||| |||||||
Sbjct 4243 CTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCA 4184
Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
||||||| || |||||||| || |||| ||||||| | || ||||| || ||||
Sbjct 4183 AGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGG 4124
Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613
| || ||| ||||||||| ||| || | ||| | | | | || | |
Sbjct 4123 GTCTTCACACCGACTTTGCCTGTCTCCT------CCACTCT---CACCTCAAGGGACGTG 4073
Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673
||||| | | | | || ||||| | ||||||||||| || || || |||||||
Sbjct 4072 CCAGCAAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTC 4013
Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733
| || || | || || | || | |||||||||| ||| || ||| ||||||
Sbjct 4012 TTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACA 3953
Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAA 125788
| || || || || |||||||| || |||| | ||| || ||| | |||||
Sbjct 3952 TCGAATTCGTCGCTGATCGTCTCCT-----CGTTGCTCTCGGCAACGAGAAGGTGTACAA 3898
Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848
||| || || || || |||||| | ||| || || | || ||||||||||| ||
Sbjct 3897 GTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTT 3838
Query 125849 CGAGAAG 125855
|||||||
Sbjct 3837 CGAGAAG 3831
>seq109
Length=515286
Score = 114 bits (126), Expect = 2e-20
Identities = 321/488 (66%), Gaps = 10/488 (2%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||| || || || || || || || | ||| ||||| | |||||
Sbjct 356204 CGTTACGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCA 356263
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| ||||| || || || | || | || || || || || ||||
Sbjct 356264 TGGCACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTC 356323
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
|| || | ||| |||| | || || ||| | || ||| | ||||||||||| ||| |
Sbjct 356324 CGCGCTCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAG 356383
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
||| | |||| || |||||||| || | || || || | || ||||
Sbjct 356384 AGAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTGCTAC 356443
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163
|| || || |||||||| |||| |||||| |||||| || | | | |
Sbjct 356444 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGG----TAAGGGTCGCAA 356499
Query 97164 GTCGATGCACG---AGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAA 97218
||| || | | |||| || ||| | ||||| | ||| ||| ||| |||||| ||||
Sbjct 356500 GTCTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGA-GGCCCAGACAGAGACCGGAA 356558
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| |||||||||||| | |||||||| || |||||| || | || |
Sbjct 356559 ACCCTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTA 356618
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
||||| ||||||| |||||||| || || | || ||| | | || || ||| |
Sbjct 356619 CCATCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCG 356678
Query 97339 CAGTTTGC 97346
| ||||||
Sbjct 356679 CTGTTTGC 356686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741051150244440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |