Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq783 140 2e-28 seq298 96.9 2e-15 >seq783 Length=7659 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7248 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7307 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7308 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7342 >seq298 Length=61374 Score = 96.9 bits (106), Expect = 2e-15 Identities = 202/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAA 6252 || || ||||| || ||||| ||| ||| ||||| ||||| |||| || || |||| Sbjct 23942 GATGCTTTCTATCGTTACAAGATGGAGCG--TCTGCAGACCAAGATCGAAGGCAAAGGAA 23885 Query 6253 ACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGGACGCCC 6310 |||||||||| ||||| |||||||| | | | | || || | |||| || || Sbjct 23884 ACGGTATTAAGACCGTTGTTGTCAACCT--CAGCAGTGTAGCAGCCTCACTCGCCCGTCC 23827 Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370 | | ||||| | || || ||||| | ||||||||| ||||| || | |||| | Sbjct 23826 CGGCTCCTACGTCATCAAGTACTTCGGTTTCGAACTTGGTGCTCAAACCAACATTGACCC 23767 Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430 ||| |||| || | ||| | ||||| | || | | ||||||| ||||| || Sbjct 23766 CAAGGACGACCGTTGGATCATCAACGGTGCCCACGATGCCCCCAAGCTCCAGGATCACCT 23707 Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 || ||||| || ||||||||| || || | ||| | ||||| |||||||| Sbjct 23706 CGATGGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 23650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943652595139