Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq199 87.8 2e-12 seq193 84.2 2e-11 >seq199 Length=44064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 8415 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 8474 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| || ||||| |||||||| || ||||| || ||||| Sbjct 8475 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 8515 >seq193 Length=35663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 257/392 (66%), Gaps = 19/392 (5%) Strand=Plus/Minus Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 |||||| ||||||| | | || | | ||| | ||||| || |||| || || Sbjct 4206 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 4147 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558 |||| | || || || || || || || ||||| |||||||| || |||| ||| | Sbjct 4146 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 4087 Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617 | | | | |||| | | ||| ||| ||||| | ||| ||| || | Sbjct 4086 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 4037 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || |||| || |||||||| |||| | || || || | ||||| ||||||| Sbjct 4036 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 3977 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || | | |||| |||||||||| || || || |||||||| | || |||| Sbjct 3976 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 3917 Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 | || | | ||| | ||| | ||| || || || || ||| | ||||| || ||| Sbjct 3916 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 3858 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | |||||||||||||| ||||||||||| || Sbjct 3857 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 3826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257009349680