Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq199 87.8 2e-12
seq193 84.2 2e-11
>seq199
Length=44064
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 8415 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 8474
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|||| || ||||| |||||||| || ||||| || |||||
Sbjct 8475 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 8515
>seq193
Length=35663
Score = 84.2 bits (92), Expect = 2e-11
Identities = 257/392 (66%), Gaps = 19/392 (5%)
Strand=Plus/Minus
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
|||||| ||||||| | | || | | ||| | ||||| || |||| || ||
Sbjct 4206 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 4147
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558
|||| | || || || || || || || ||||| |||||||| || |||| ||| |
Sbjct 4146 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 4087
Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617
| | | | |||| | | ||| ||| ||||| | ||| ||| || |
Sbjct 4086 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 4037
Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677
| || |||| || |||||||| |||| | || || || | ||||| |||||||
Sbjct 4036 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 3977
Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|| | | |||| |||||||||| || || || |||||||| | || ||||
Sbjct 3976 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 3917
Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796
| || | | ||| | ||| | ||| || || || || ||| | ||||| || |||
Sbjct 3916 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 3858
Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
| |||||||||||||| ||||||||||| ||
Sbjct 3857 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 3826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496257009349680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |