Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq246 96.9 8e-15
seq496 89.7 1e-12
seq199 86.0 1e-11
>seq246
Length=212372
Score = 96.9 bits (106), Expect = 8e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| |||||||||||||||||||| |||| ||||||||| | | ||
Sbjct 108017 CGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 108076
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519
| ||||| || |||||||| |||||||| || | |||||||| || |||
Sbjct 108077 CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGA 108127
>seq496
Length=401694
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | ||||| || |||||||| ||||||||||
Sbjct 192909 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 192850
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||| ||||| || || || ||||| ||||| ||| || |
Sbjct 192849 TCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 192790
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 192789 CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 192730
Query 199620 AA 199621
||
Sbjct 192729 AA 192728
>seq199
Length=44064
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| | ||| || || |||||||| |||| ||||||||| || ||
Sbjct 8388 CGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 8447
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| ||||| || |||||||| || || ||||| || ||||||||||||||
Sbjct 8448 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 8497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178908473813223
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |