Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq109 179 5e-40
seq193 123 3e-23
seq545 86.0 8e-12
>seq109
Length=515286
Score = 179 bits (198), Expect = 5e-40
Identities = 565/867 (65%), Gaps = 19/867 (2%)
Strand=Plus/Plus
Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670
||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| |||
Sbjct 355852 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 355911
Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
|||||||||||| || ||||| | | |||| || |||| || || | ||
Sbjct 355912 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTATT 355971
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| ||||| ||| || || | || || |||||| ||| | ||||||||
Sbjct 355972 CAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGGA 356031
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| |||| || |||| || |||| |||||| || || ||| ||||||
Sbjct 356032 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 356091
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910
|||||| || || || ||| || | |||| ||| || ||||| ||
Sbjct 356092 TGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 356151
Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970
|||| || | ||||| |||| ||||| || || || ||| ||| || || || ||
Sbjct 356152 TGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 356211
Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024
|||| | ||| | |||| || || |||| |||| ||||| ||||||||
Sbjct 356212 TGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 356268
Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082
||| || || | ||||||||||| | || || || ||| | ||||||| ||||
Sbjct 356269 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 356328
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
| || || || |||| ||||| ||||| || ||||| ||||||||| | || |||
Sbjct 356329 T--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGA 356386
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
| ||| | ||| ||||| | || || || || || || || || | || | ||
Sbjct 356387 AACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTACGG 356445
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261
||| || ||||| || || ||| |||||||||| ||| || || | | || | |
Sbjct 356446 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 356503
Query 112262 GCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319
|| ||| | | ||| | || ||||| || | || || ||||| || | ||
Sbjct 356504 ATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACCCT 356563
Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379
| ||||| ||||| || ||| || | |||||||| |||||||| | ||| |||
Sbjct 356564 TTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCATC 356623
Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439
|| |||||||| || || || ||| | |||| | | |||||| |||||
Sbjct 356624 CGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTT 356683
Query 112440 TGTAACCTCGCATCAATCGCTCTCCCC 112466
|| ||||| || || | |||| |||
Sbjct 356684 TGCAACCTTGCCTCCTTGTCTCTGCCC 356710
>seq193
Length=35663
Score = 123 bits (136), Expect = 3e-23
Identities = 350/525 (67%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 101873
||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | |
Sbjct 4622 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 4563
Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933
| | || | | ||||| |||| || || ||||| |||| ||||| || ||
Sbjct 4562 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 4503
Query 101934 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991
|| ||||||| | | | | | | || | ||||| || |||| | || || |||
Sbjct 4502 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 4445
Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050
||||||| || || | |||| ||| | | | || || |||||| |||
Sbjct 4444 GCTTCTATG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 4386
Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110
|| || | || || ||||| ||| || | | ||||| | ||| | | ||
Sbjct 4385 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 4326
Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 102167
|||| || || | |||||| ||||||||||| || ||| | |||| || ||
Sbjct 4325 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 4267
Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227
| |||| ||| |||| || | || ||||| |||||||||||||||||| |||
Sbjct 4266 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 4209
Query 102228 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|||| ||| | || | |||||||||||||| || |||||||| ||||| |||| ||
Sbjct 4208 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 4150
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||| || |||||||| ||||| || ||| || |||||
Sbjct 4149 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 4105
>seq545
Length=222506
Score = 86.0 bits (94), Expect = 8e-12
Identities = 188/275 (68%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
|||||||||||| || || |||| |||||| || || | || | | | || ||
Sbjct 166931 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 166990
Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182
||| ||||||||| | || ||||| ||||||||||| || || | | || ||
Sbjct 166991 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 167050
Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242
| || | |||||| || ||| ||||| || |||| ||| || | |||||||| |
Sbjct 167051 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 167109
Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299
|||| || || || | | ||||||||||| |||||||| || || |||| |
Sbjct 167110 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 167169
Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333
||||||| ||||| ||||| | ||||| |||
Sbjct 167170 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTC 167200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620735657185680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |