Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq109 179 5e-40 seq193 123 3e-23 seq545 86.0 8e-12 >seq109 Length=515286 Score = 179 bits (198), Expect = 5e-40 Identities = 565/867 (65%), Gaps = 19/867 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| ||||| | || ||| || || |||||||| ||| Sbjct 355852 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 355911 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || ||||| | | |||| || |||| || || | || Sbjct 355912 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTATT 355971 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| ||| || || | || || |||||| ||| | |||||||| Sbjct 355972 CAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGGA 356031 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || |||| || |||| || |||| |||||| || || ||| |||||| Sbjct 356032 CAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGG 356091 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || || || ||| || | |||| ||| || ||||| || Sbjct 356092 TGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACCAA 356151 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| || | ||||| |||| ||||| || || || ||| ||| || || || || Sbjct 356152 TGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGT 356211 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024 |||| | ||| | |||| || || |||| |||| ||||| |||||||| Sbjct 356212 TGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 356268 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 ||| || || | ||||||||||| | || || || ||| | ||||||| |||| Sbjct 356269 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 356328 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 356329 T--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGA 356386 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | ||| | ||| ||||| | || || || || || || || || | || | || Sbjct 356387 AACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTACGG 356445 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 ||| || ||||| || || ||| |||||||||| ||| || || | | || | | Sbjct 356446 TGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCT 356503 Query 112262 GCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || ||| | | ||| | || ||||| || | || || ||||| || | || Sbjct 356504 ATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACCCT 356563 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| || ||| || | |||||||| |||||||| | ||| ||| Sbjct 356564 TTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCATC 356623 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || |||||||| || || || ||| | |||| | | |||||| ||||| Sbjct 356624 CGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTGTT 356683 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCC 112466 || ||||| || || | |||| ||| Sbjct 356684 TGCAACCTTGCCTCCTTGTCTCTGCCC 356710 >seq193 Length=35663 Score = 123 bits (136), Expect = 3e-23 Identities = 350/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 101873 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 4622 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 4563 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 4562 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 4503 Query 101934 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 4502 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 4445 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050 ||||||| || || | |||| ||| | | | || || |||||| ||| Sbjct 4444 GCTTCTATG-GTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 4386 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 4385 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 4326 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 102167 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 4325 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 4267 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | |||| ||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 4266 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 4209 Query 102228 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 4208 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 4150 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||| ||||| || ||| || ||||| Sbjct 4149 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 4105 >seq545 Length=222506 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||| || || |||| |||||| || || | || | | | || || Sbjct 166931 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 166990 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 ||| ||||||||| | || ||||| ||||||||||| || || | | || || Sbjct 166991 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 167050 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || | |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 167051 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 167109 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 16299 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 167110 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 167169 Query 16300 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATCTC 16333 ||||||| ||||| ||||| | ||||| ||| Sbjct 167170 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAACTC 167200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735657185680