Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq243 120 4e-21
seq109 113 6e-19
seq193 105 8e-17
seq306 104 3e-16
>seq243
Length=44036
Score = 120 bits (132), Expect = 4e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
||||||||||| |||||||| || ||||| |||| |||||| | || ||||||||||||
Sbjct 33873 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 33814
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 33813 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 33773
>seq109
Length=515286
Score = 113 bits (124), Expect = 6e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 356218 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 356159
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 356158 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 356099
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 356098 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 356039
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || || || || | || ||
Sbjct 356038 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 355979
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 355978 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 355919
>seq193
Length=35663
Score = 105 bits (116), Expect = 8e-17
Identities = 174/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||||||||| | || |||||
Sbjct 3808 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 3867
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | ||
Sbjct 3868 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 3927
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 3928 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 3987
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | |||||| | ||| || ||||| ||| |||
Sbjct 3988 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 4047
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 4048 ATGT-CCTGG 4056
Score = 87.8 bits (96), Expect = 2e-11
Identities = 175/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273
|| || ||||||||||| |||||||||||||| |||||| | || || || ||| ||
Sbjct 4159 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 4216
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||| ||||| ||||| ||||| | | || |||| || ||| || || | ||
Sbjct 4217 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAG--GTAGA-GTTCT 4273
Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393
| | |||||| || ||||| || ||||| || | | | || | ||||| |
Sbjct 4274 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 4333
Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452
|||| ||||||| || | | ||| |||||||||| ||||| ||||| |||||
Sbjct 4334 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 4392
Query 869453 GAATAGGTCTC 869463
|| || || ||
Sbjct 4393 GAGTATGTTTC 4403
>seq306
Length=175644
Score = 104 bits (114), Expect = 3e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||||| ||||| | ||| | || |||||||||
Sbjct 127831 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 127890
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 127891 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 127950
Query 19167 AAGGGATTCGAG 19178
|||| ||||||
Sbjct 127951 AAGGCCTTCGAG 127962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107067885790473
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |