Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq91 141 3e-28 seq198 114 4e-20 seq720 86.0 2e-11 >seq91 Length=149158 Score = 141 bits (156), Expect = 3e-28 Identities = 437/671 (65%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 71173 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 71114 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 71113 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 71054 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || || | ||||| | |||| || || Sbjct 71053 GTCTTCGACGCCAAGCGATTGATCGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAG 71000 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | || | ||| | || || || || Sbjct 70999 GCCGATATGAAGCACTTCCCCTTCACAATCATTG-ACAAGGC--TGGCAAGCCCGCCATC 70943 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 70942 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 70883 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | || ||| Sbjct 70882 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 70823 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || ||||| || | Sbjct 70822 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 70763 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 70762 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 70703 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | ||| || || | || || || ||| | ||||||||| Sbjct 70702 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 70643 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 70642 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 70583 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| || || ||||||||| || || ||||| Sbjct 70582 GGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGTCTCGTTAACCACTTCGTTAAC 70523 Query 349916 GAATTTAAGCG 349926 || || ||||| Sbjct 70522 GAGTTCAAGCG 70512 >seq198 Length=63975 Score = 114 bits (126), Expect = 4e-20 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 11580 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 11521 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| || || |||| ||||| |||| | | || |||| Sbjct 11520 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 11461 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 | || || | || | || |||| ||||| || || ||||||| | ||||||| Sbjct 11460 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 11401 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458 || || ||| | ||||| || ||||| || || | ||||||| |||| |||| Sbjct 11400 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 11344 Query 378459 CATTTGAGCAATATT 378473 |||||| | ||| || Sbjct 11343 CATTTGCGAAATGTT 11329 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| | || || ||| || || | |||||||| || Sbjct 12374 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 12318 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | ||||||||||| ||||| || || | ||| Sbjct 12317 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 12258 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 ||||||||||| ||||| ||||| | ||| Sbjct 12257 CCAACCATTTCACCAGGGTTGACGAAAGC 12229 >seq720 Length=827 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 140616 TGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAA 140675 |||||||||||||| || || || || |||||||| || | || || || || || | | Sbjct 3 TGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTA 62 Query 140676 TCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 ||||||| ||||| || || |||| ||||| ||||| | || || || || |||||| Sbjct 63 TCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGC 122 Query 140736 AT 140737 || Sbjct 123 AT 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515237529062807