Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq109 223 4e-53
seq215 147 2e-30
>seq109
Length=515286
Score = 223 bits (246), Expect = 4e-53
Identities = 418/608 (69%), Gaps = 10/608 (2%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|| ||| || | ||||||| ||||| | || ||| |||||||| |||||||
Sbjct 355853 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 355912
Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297
||||| ||| || | ||| ||| |||| ||| || || || | || || | |
Sbjct 355913 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 355970
Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357
||||||| ||||| || |||||| | || |||||||| || | |||||||| |
Sbjct 355971 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 356030
Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417
|| || || || |||||||| || |||||| |||||| || |||||| | | |
Sbjct 356031 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 356090
Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475
||||||| || | || | |||| ||||||| | ||| | ||| || ||
Sbjct 356091 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 356148
Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|| || || | || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 356149 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 356208
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| ||||||||||| ||||| || | |||||||||||||| || || |||||
Sbjct 356209 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 356268
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||||||| | | ||||| || || || || |||||| ||| | || ||| | |||
Sbjct 356269 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 356328
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||||| |||||| ||||| || || || |||||| | || |||| |
Sbjct 356329 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 356388
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774
|| || ||| || |||||||| ||||| ||||| |||| | | | || ||||||||
Sbjct 356389 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 356447
Query 53775 AGGAGTTT 53782
| || |||
Sbjct 356448 ACGAATTT 356455
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786
|||||| | ||| ||| |||||||||||| | ||| | || || | | ||| |
Sbjct 357384 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 357442
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | |||
Sbjct 357443 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 357502
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 357503 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 357562
Query 55907 ATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 357563 ATGTACTACCTCCGTAC 357579
>seq215
Length=125206
Score = 147 bits (162), Expect = 2e-30
Identities = 191/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
||| || |||||| ||||||||| || |||||||| ||||| ||||| || | |||
Sbjct 28286 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 28227
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| |
Sbjct 28226 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 28167
Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477
| | ||| || ||| || | ||||| ||||| || |||||||| || | |||
Sbjct 28166 GCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 28107
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
|| || |||| | | | |||||| ||||| ||| ||| |||||| ||| || ||
Sbjct 28106 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 28047
Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561
|| ||||||||||||| |||||
Sbjct 28046 GATGACCTTGCGCTGACCGGGCTT 28023
Score = 120 bits (132), Expect = 3e-22
Identities = 206/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||| |||| || | ||||| ||||| |||||||| || || | || ||
Sbjct 28282 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 28223
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| |
Sbjct 28222 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 28163
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| ||| || || || | |||||||||||| || |||||||| || | | ||
Sbjct 28162 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 28103
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||| |||| | ||| ||| |||||| || ||||| ||
Sbjct 28102 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 28043
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||||||| || || || ||||||| || ||||| || ||| || ||||
Sbjct 28042 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 27984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547210055866200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |