Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq109 246 3e-60 seq215 127 2e-24 seq199 123 3e-23 seq720 116 4e-21 seq496 111 2e-19 seq193 96.9 4e-15 seq246 89.7 6e-13 >seq109 Length=515286 Score = 246 bits (272), Expect = 3e-60 Identities = 1131/1762 (64%), Gaps = 68/1762 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || ||||||||| | |||| Sbjct 357585 GCCTGTGTACGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGC 357526 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| || |||| ||||| ||||||||||||||| Sbjct 357525 ATGCTGGTGATCTTGCCCATGGTAGGGTCCTTCATGTGAATGTTGAGAGACTGAGACTGA 357466 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT-TTCAATAATTGACTTTTGTGGAATTTCCCA 80210 ||||| || ||||| || || ||||| | || | || | || | ||| ||||| Sbjct 357465 TCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAACCTGTC-GCTGAGAAATCTCCCA 357407 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | || |||| | | | | | Sbjct 357406 CACAGTCTTGTACAGAGCCTT---GATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGA 357350 Query 80268 ACCGTCCTTTACA---ATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| | || || | || |||| || | ||| | ||| | | | || Sbjct 357349 ACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAG 357290 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| || | || ||||| || || ||| || || | Sbjct 357289 ATCCTTGAGAAGCCAGGGGTTGACAA-CCTG--GAACTCGCCAGCAAGGACTCGGCGTTG 357233 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | |||||||||||||| |||||||| || || ||||| | || || Sbjct 357232 GTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTACT 357173 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | || | ||| || || | ||||| |||||| |||||| Sbjct 357172 GGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTC 357113 Query 80502 GCGCA---AATCTGA---CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGC 80553 || | || | ||||| ||| | ||| |||| |||||||||| | Sbjct 357112 TCGGAGGGGTTCCCAGTCCCAAAGGTCA----GAGGGCT-TGACATTCCACATGTCGAAC 357058 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | || ||||| || || || || ||| ||| || ||| || || ||| |||| Sbjct 357057 TGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTG 356998 Query 80614 GCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 || || | |||| ||| ||||||| ||||| || ||| ||| |||| |||||| Sbjct 356997 GCGAGTTGCACA-GACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTT 356939 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 || | || |||| || || || | || || | | || | ||||| || Sbjct 356938 CAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAG 356879 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791 || || || || | | || || ||||| ||| |||| | | || ||||| | | Sbjct 356878 ACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTT-GCTGTTACGAGCCTCTTGGA 356820 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| ||||||| ||||| ||||| |||||| | || || | Sbjct 356819 CAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCT 356760 Query 80852 CATGAAGTTTCTGAAAGTCGAA--TTGGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905 | || || |||| |||||| | | || | || | ||| | || || || Sbjct 356759 CGTGCAGCTTCTTGAAGTCGTAGCAAGCATCTTCATAGTTGATAAAAGAGGGCAGAGACA 356700 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 ||| || || ||||| || || ||||| |||| | | || | ||| || |||| Sbjct 356699 AGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGC 356640 Query 80966 ACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 ||| || || ||| || ||||| ||||| || ||||| |||| ||||| Sbjct 356639 ACAGGTTGGA--GCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTG 356582 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| ||| Sbjct 356581 ATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCA 356522 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 || | | ||||||| |||||| || || || | | ||||| |||| Sbjct 356521 AAGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 356462 Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | || || | | |||||| | || |||| ||| | ||||| |||||||||||||| | Sbjct 356461 AGCCTCAAATTCGTCACCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 356403 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 | ||| ||| || |||| ||| |||||||||| ||||||||||| || || Sbjct 356402 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 356343 Query 81263 TGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320 ||||||||| || |||||| ||||||| | ||| || || || | || || || Sbjct 356342 AGAACAGGTCACG--AGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 356285 Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCG 81374 || | || ||| || |||||||| || || || | ||||| | || | |||| Sbjct 356284 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 356225 Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | |||||||||| |||||||| ||||| ||| || ||||||| ||| || | ||| Sbjct 356224 A---CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGAT 356168 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTG 81492 ||| | || ||| || ||||| |||| || || |||| || | | || Sbjct 356167 ACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGC 356108 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 || || || || ||||| | | ||| |||||| ||||| || | ||| || Sbjct 356107 GTTCAA--GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 356050 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || || || ||||| || | ||||| |||| | ||| || ||| | |||||| Sbjct 356049 TAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGG- 355991 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 | | ||| ||||| ||||| | || ||| | || ||| |||| | | |||||| Sbjct 355990 -CTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACA 355932 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| || || ||| ||| || |||||||||||| || || | ||| || | Sbjct 355931 TGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGACTC 355872 Query 81731 GCATAAACATGTACTG-GGGCG 81751 |||| | ||| | ||| ||||| Sbjct 355871 GCATGATCATATGCTGCGGGCG 355850 >seq215 Length=125206 Score = 127 bits (140), Expect = 2e-24 Identities = 298/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| || |||||| || |||||| ||||||| ||||||||||| || || Sbjct 27989 CATGCGATCTATTCCATCTGTTCTGGACGGATTCAAGCCCGGTCAGCGCAAGGTCATCTA 28048 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 ||| ||| |||||| ||| || | |||| |||||| | | || | || || || Sbjct 28049 CGCGTGCTTCAAGAGAAACTTGATCAAAGACAAGAAGGTCGTTGAATTGGCAGGTTATGT 28108 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | || || ||||| || |||||||| || ||| || || |||||| | ||| Sbjct 28109 GTCCGAACAGACGGCATACCACCACGGTGAACAGTCACTTCAACAGACCATTATTGGCCT 28168 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 |||||||||||| || || | || ||| | |||| || || || |||| | || || Sbjct 28169 TGCTCAGAACTTCGTGGGCTCGAACAACATCAACTGCCTGGAACCCAGTGGAAACTTCGG 28228 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTC 32256 | || || || ||||| |||||||| || | ||||||| |||||||| | || Sbjct 28229 TTCTCGACTTGCAGGTGGTTCTGATGCTGCCAGTCCTCGTTACACTTTCACCCGACTATC 28288 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316 || |||||| | ||||| || || |||| ||| || | || | || ||| | Sbjct 28289 GC-CCTTCG-CCCGCAAAATCTTTCACCCTATGGATGAGCCCAACCTGTTGCACCATTAT 28346 Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376 || || || || ||||||| || | || || | ||||| ||| | |||| Sbjct 28347 GAAGATGGCAAGAAAATCGAGCCAATGGTATATGCCCCAATTCTTCCCATGGTACTGGTC 28406 Query 32377 AACGGTGCAGAAGGCATCGGAACGGG 32402 |||||||| || || || || || || Sbjct 28407 AACGGTGCCGATGGTATTGGCACAGG 28432 >seq199 Length=44064 Score = 123 bits (136), Expect = 3e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 27497 AGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 ||||||||||||| || || || ||||||||||| || || |||||||||||||| |||| Sbjct 8517 AGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCG 8458 Query 27557 AGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||||| || ||||| ||| ||||| || |||| ||||| ||||| ||||| | ||| Sbjct 8457 AGGATGGCCGCACCCTGAGC-GACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTC 8399 Query 27616 TTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| Sbjct 8398 CTCCGCCTTCGTGGTGG 8382 >seq720 Length=827 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||||||||| || |||||||||||| | Sbjct 124 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 65 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||||||||||||||| || ||||| || ||| Sbjct 64 GATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 5 Query 27526 CAGC 27529 |||| Sbjct 4 CAGC 1 >seq496 Length=401694 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 192729 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 192788 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || || |||||||| | Sbjct 192789 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 192848 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 192849 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 192908 Query 27595 G 27595 | Sbjct 192909 G 192909 >seq193 Length=35663 Score = 96.9 bits (106), Expect = 4e-15 Identities = 256/386 (66%), Gaps = 9/386 (2%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || || | || | ||||||| Sbjct 4310 AAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTCGCTCAGCGT 4251 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | |||||||| || || || || ||||| || | || ||| || ||| Sbjct 4250 CTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 4191 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| ||||| ||||| |||||| ||||| |||||||| || ||||| Sbjct 4190 TGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGT 4131 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA-GGACAAACC 64898 || ||||| || ||| || ||||| | ||| | |||||||| |||| || Sbjct 4130 GATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCACCTCAAGGGACGTGCC 4071 Query 64899 ATCACATGGGACTATAATTGATATAGTAAAATCG--GCTGTAGAAATTGAAAAGGAATTC 64956 | || | || || || || || | || || || ||||| |||| || Sbjct 4070 AGCA-AACAGATGATCCAGGACAT--TATCACCGATGCCGTTTCTATTGAGCAGGAGTTT 4014 Query 64957 ATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTAT 65016 |||||| || || || ||| || |||||||| | || | ||||| ||||| Sbjct 4013 CTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTAC 3954 Query 65017 ATCGAATTTGTAGCAGATCGCCTGCT 65042 |||||||| || || ||||| || || Sbjct 3953 ATCGAATTCGTCGCTGATCGTCTCCT 3928 >seq246 Length=212372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || ||||| |||||| Sbjct 108009 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 107950 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAAT 27512 || | ||| | ||| ||||| | || || |||||||||||||| || Sbjct 107949 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCAT 107903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304205003280