Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq321 86.0 6e-12
>seq321
Length=94584
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGAT 6552
||||| | || ||| || ||| ||||| || | || |||| | ||| || |
Sbjct 33934 AATTTCCAACTCGGGAAAGTTTCGCGGCTCGCGCTCAAGTTGGACCTTGAGGGCATCAAC 33993
Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612
||| | ||||| | ||| ||||| |||| ||| || ||||| |||| | |
Sbjct 33994 GTGATCGAGGTACACATGAGCATCACCCATGACATGGGTAAGGCTTCCAGGGACCAGCTC 34053
Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672
||| || || ||||||| || ||||| ||||| |||||||||||||| || || ||
Sbjct 34054 ACAGACGTGTGCCATCATGTGTGTCAGCAGCGCGTAGCTAGCAATGTTGAAGGGAACGCC 34113
Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
| |||||||| | ||||||||||| | ||| |||
Sbjct 34114 CAGACCCATGTCGCAAGATCGTTGATATAACTGACAG 34150
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||| ||| | ||||||||||| | |||||||| | || || || ||||||||||||||
Sbjct 34150 CTGTCAGTTATATCAACGATCTTGCGACATGGGTCTGGGCGTTCCCTTCAACATTGCTAG 34091
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755
||||| ||||| || ||||||| || || ||| | | |||| ||||| ||
Sbjct 34090 CTACGCGCTGCTGACACACATGATGGCACACGTCTGTGAGCTGGTCCCTGGAAGCCTTAC 34031
Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815
||| |||| ||||| ||| | ||||| | ||| | || ||| | |||| ||
Sbjct 34030 CCATGTCATGGGTGATGCTCATGTGTACCTCGATCACGTTGATGCCCTCAAGGTCCAACT 33971
Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATT 34852
| || ||||| ||| || ||| || | |||||
Sbjct 33970 TGAGCGCGAGCCGCGAAACTTTCCCGAGTTGGAAATT 33934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448257530749680
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |