Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31]
869 sequences; 36,490,312 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq109 172 8e-38
seq193 127 3e-24
>seq109
Length=515286
Score = 172 bits (190), Expect = 8e-38
Identities = 602/926 (65%), Gaps = 18/926 (2%)
Strand=Plus/Minus
Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339
|| || || || ||||| || ||||||| || | |||| || ||||| |||||
Sbjct 356697 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 356638
Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTC 76398
|| || | ||| || ||||| || | |||||| ||||| || || ||| ||
Sbjct 356637 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGA-TC 356579
Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458
||| || || | || || |||| || || |||| | || | ||| | | ||| |
Sbjct 356578 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 356520
Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATATTGT--GTATA 76512
| ||| ||| || || ||| ||| | ||| |||||| || || | | ||| |
Sbjct 356519 GTTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 356463
Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572
| || |||||||| || || | ||| | | ||||| ||||| || || |||||
Sbjct 356462 GAGCC--TCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 356405
Query 76573 CAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632
| | ||| || || | | || || || ||||| || |||||||| ||||| |||||
Sbjct 356404 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 356345
Query 76633 AATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAA 76692
| || || || || | | || || || || ||||||| ||||| |||||
Sbjct 356344 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 356285
Query 76693 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATT 76752
||| | | || | ||||||||||| || || || || | |||| ||||| || ||
Sbjct 356284 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 356225
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| ||||| || | || | |||||||| || | || | || ||| |||| || ||
Sbjct 356224 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 356165
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
||| || |||||||| || || | || ||| ||| ||||| || | | |
Sbjct 356164 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 356106
Query 76873 T-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931
| | ||| || || || ||||| || || || | ||||| || | || || ||||
Sbjct 356105 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 356046
Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991
| || || || || || ||| |||| | || ||| || || || | ||| | ||
Sbjct 356045 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 355986
Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051
||| || || || || || || || |||||||||||| | || || | || |
Sbjct 355985 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 355926
Query 77052 TGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATC 77110
||||||| || | || || ||||| || | ||||| |||||||| |||||
Sbjct 355925 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 355867
Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCC 77170
| ||||||||| || || || || | || | || | | |||||||||| | |
Sbjct 355866 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 355807
Query 77171 AAAGTTTTAAAACCAAAATAGTTGTA 77196
|| ||| || ||||||||||||||
Sbjct 355806 AAGGTTCGGAAGCCAAAATAGTTGTA 355781
>seq193
Length=35663
Score = 127 bits (140), Expect = 3e-24
Identities = 366/559 (65%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688
||| ||||| || ||||| || ||||| | | ||| | ||||||||||| | ||
Sbjct 4101 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 4160
Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748
|||||||| || |||||||| |||||||| || || | || || | || |||||
Sbjct 4161 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 4220
Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---G 46805
|| || || || || || || || ||||| | || || | | | | |||| |
Sbjct 4221 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 4280
Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865
||||| | |||||||| ||||| || | ||||| || || || | || ||
Sbjct 4281 GATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGTT 4340
Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925
||||| | | | || || || | || ||||| || | || || |
Sbjct 4341 GAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATGT 4400
Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985
||| || || ||||| || || ||||| || || || || |||| || || | ||
Sbjct 4401 TTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGAT 4460
Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAG 47044
||| ||||| | ||||| ||| |||| ||||||||| || || || || ||||
Sbjct 4461 CTGGACCTCGCCGCTGAATCGCTCA-ACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 4519
Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCC 47101
| || || || | | || || || |||| || || | ||||| | || ||||
Sbjct 4520 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 4579
Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161
|||| | || ||| || || | ||| | || |||||||||||||| || |||||||| |
Sbjct 4580 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 4639
Query 47162 TTTTATACATATTCCATAT 47180
| || ||||| | ||| ||
Sbjct 4640 TCTTGTACATTTGCCAGAT 4658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712926655750080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |