Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq496 147 5e-30 seq193 116 8e-21 seq199 95.1 3e-14 seq720 86.0 1e-11 seq123 86.0 1e-11 >seq496 Length=401694 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || ||||| |||||| Sbjct 192907 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 192848 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || || || || ||||||||||| |||||||| | || || | ||| Sbjct 192847 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 192788 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||||| ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 192787 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 192729 >seq193 Length=35663 Score = 116 bits (128), Expect = 8e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTA 230226 |||| || | ||| | | ||| ||||||| || || ||| | ||||| || Sbjct 4045 TCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGC 3986 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 |||||||||| | | |||||| ||| || ||||||||||| ||||||||| | ||| Sbjct 3985 TCGGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCG 3926 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | || || || ||||||| ||||| || |||| ||||| |||| || |||||| || Sbjct 3925 TTGCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACA 3866 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 | || || || || || ||||||||||| ||||| || || || || | | ||| Sbjct 3865 TCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTTGCTGACTACCAGAAGGCCG 3806 Query 230407 GTGT 230410 |||| Sbjct 3805 GTGT 3802 >seq199 Length=44064 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| Sbjct 8381 ACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 8440 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || ||||| || Sbjct 8441 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 8500 Query 282992 AATACCCTCCTTGTC 283006 |||||||||||||| Sbjct 8501 GATACCCTCCTTGTC 8515 >seq720 Length=827 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || ||||||||||| || ||||| | || ||| | |||||||| || || | || Sbjct 15 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATGACTCA 74 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 75 ACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 124 >seq123 Length=41057 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| |||| ||||| || |||| | | |||||||| Sbjct 40056 GTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAAAGAGCACCGAG 39997 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || ||||| | | ||||||| ||||| ||||||||||| | |||||| | ||||| Sbjct 39996 AGAGTCACGGTCAAGATAGTTGGTAGGCTCGTCAAGAACGATAAGATGGGGTCGCTGCCA 39937 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 ||||| ||| | | || ||| | || ||||| ||||| ||||| || |||| Sbjct 39936 -AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCGGACAGACCACGCATACGAG 39878 Query 315830 AATGAG 315835 | |||| Sbjct 39877 AGTGAG 39872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727545540326