Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966635.1_202015-03-31] 869 sequences; 36,490,312 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq496 140 8e-28 seq199 86.0 2e-11 seq246 84.2 5e-11 seq109 84.2 5e-11 >seq496 Length=401694 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || || |||||||| Sbjct 192728 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCAT 192787 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || ||||| ||||| ||||| ||| | Sbjct 192788 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATT 192847 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 192848 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 192907 >seq199 Length=44064 Score = 86.0 bits (94), Expect = 2e-11 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 ||||||| || || ||||| ||||||||||| ||||||||||| || || || ||||||| Sbjct 8517 AGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCG 8458 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | ||||| | || || ||| || ||| |||| || || || || || || |||| Sbjct 8457 AGGATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCA-CTTG 8402 >seq246 Length=212372 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || |||||||||||||| || || ||| Sbjct 108006 CAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCCGAC 107947 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 |||||||| || || || ||||| |||||||| || || |||| Sbjct 107946 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCC 107901 >seq109 Length=515286 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/263 (69%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCG---GCAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| || ||||| || ||||| ||| || ||| ||||| |||||||| Sbjct 356616 CCAAGGTTCTTTTGGTTACTCTTGCGATTGCAG-TG--ATCCTTGTAGAGCATGAAAGGG 356560 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCAC-GAC 214238 |||| ||| || || |||||||| | ||| |||| || ||||| | ||| Sbjct 356559 TTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGAC 356500 Query 214239 CTTTTTGGCTCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGT 214297 || | | ||| ||||| | ||||||||||| || |||| ||||||||| ||||| Sbjct 356499 --TTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGT 356442 Query 214298 AGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 || ||| |||| || || ||||| ||||| | ||| |||||| || || || | Sbjct 356441 AGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTT-TCTC 356383 Query 214358 T-GACTCTTTTCATGAAAAGGTC 214379 | ||| | ||||||||||| || Sbjct 356382 TCGACACGCTTCATGAAAAGATC 356360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717797581586