Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq380 233 2e-56
seq323 129 6e-25
seq85 127 2e-24
seq58 102 8e-17
>seq380
Length=646993
Score = 233 bits (258), Expect = 2e-56
Identities = 397/564 (70%), Gaps = 15/564 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 392764 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 392705
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750
|||||||| | | | ||||||| | || |||| | || |||||| | ||||||
Sbjct 392704 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 392647
Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810
||| | || || || ||||| ||| ||||||||||||||| |||||||| || ||||
Sbjct 392646 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 392587
Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
| ||| ||||| ||| | ||||||| || |||||||| || || |||||| |
Sbjct 392586 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 392527
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927
|||||||| | ||||| |||| || || ||||||||| || ||| | | | ||
Sbjct 392526 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 392467
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | | | | | | || |||||| | || || || || ||| || | ||||||
Sbjct 392466 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 392410
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046
| || ||||| | || |||||| | || || | | |||||| |||| || ||
Sbjct 392409 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTT 392351
Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106
|| || || ||||| ||||| ||||||| || || || |||| || ||||||
Sbjct 392350 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 392291
Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166
||||| || ||||||||||| || |||| || ||||||||||| || | || |||
Sbjct 392290 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAG 392231
Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190
||||| || |||||||||||||
Sbjct 392230 GGTCTTCACACCGACTTTGCCTGT 392207
>seq323
Length=1534178
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 1260115 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 1260174
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||| ||||| ||| |
Sbjct 1260175 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 1260234
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 1260235 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 1260294
Query 40879 G 40879
|
Sbjct 1260295 G 1260295
>seq85
Length=135120
Score = 127 bits (140), Expect = 2e-24
Identities = 157/211 (74%), Gaps = 9/211 (4%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 94188 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 94129
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTC----TC---GACAAAGAGGGCATCCCCG 40801
|||| | | | |||| ||||| || || | || ||||| ||||| ||||||
Sbjct 94128 GACACCATTGACAACG-TCAAGTCCAAGATCCANNATCCAGGACAAGGAGGGTATCCCCC 94070
Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861
|||||||||| ||||| |||| || || || ||||| || || | |||||||| | ||
Sbjct 94069 CGGACCAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCG 94010
Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||||||||| |||| || ||
Sbjct 94009 ACTACAACATCCAGAAGGAGTCCACCCTTCA 93979
>seq58
Length=162708
Score = 102 bits (112), Expect = 8e-17
Identities = 144/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || | || ||||| ||||||||| | || ||||| | |||||| |
Sbjct 44009 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGACACTATCG 43950
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| ||||| ||||| | || ||||| ||| |
Sbjct 43949 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTG 43891
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| ||||| ||||| || |||| || |||||| |||||| ||||||||||||
Sbjct 43890 ATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTATAACATCCAGAAG 43831
Query 40879 GAGGCCACGCTGCATCTAGT 40898
|| | || || || || ||
Sbjct 43830 GAATCAACCCTTCACCTGGT 43811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216070043360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |