Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq85 114 1e-20
seq323 104 2e-17
seq58 102 7e-17
>seq85
Length=135120
Score = 114 bits (126), Expect = 1e-20
Identities = 156/217 (72%), Gaps = 7/217 (3%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||||||| ||||| |||||||
Sbjct 93973 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 94032
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648
||||| || ||||| |||| || |||||||| || || || || |||||||||| |||
Sbjct 94033 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 94092
Query 118649 A------ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702
| || || || || | || | |||||| | ||| ||||| | ||| |
Sbjct 94093 ATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 94152
Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| || || || || || || || ||||||||||||
Sbjct 94153 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189
>seq323
Length=1534178
Score = 104 bits (114), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | || || |||||||||||| || || ||| ||||
Sbjct 1260293 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 1260234
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||||| || || |||||||||||||| || || || || | |||
Sbjct 1260233 AATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1260174
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| ||||||||||| ||| | || ||||| ||||| || || || |||
Sbjct 1260173 ATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 1260114
Query 118731 ATCTGCATGGC 118741
||| |||||
Sbjct 1260113 --CTGGATGGC 1260105
>seq58
Length=162708
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || ||||||||||||||| | ||||| ||||||||||||
Sbjct 44098 GTGGAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTG 44157
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| || ||| | || | ||||||||||| ||||| || |||||||| || ||
Sbjct 44158 CTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGGAT--NNTCCTTGTCCTGGATCTT 44215
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| |||||| | ||||||||||| ||| | || ||||| ||
Sbjct 44216 GGACTTCACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGT 44275
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||
Sbjct 44276 GAGGGTCTTGACGAAGATTTGCAT 44299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827830368312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |