Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq85 109 4e-19 seq323 95.1 1e-14 >seq85 Length=135120 Score = 109 bits (120), Expect = 4e-19 Identities = 158/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| |||| ||| | || || Sbjct 93973 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 94032 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | ||||||||||||| Sbjct 94033 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 94092 Query 45248 ATTTT-----TTG--CTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 || | ||| ||| || | | | |||| | ||||||||| | ||| || Sbjct 94093 ATNNTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 94152 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||||| ||||| || ||||| || || || |||||| ||||| Sbjct 94153 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATGCCT 94195 >seq323 Length=1534178 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||| |||||||||||| || | ||| ||| ||| || || || ||||||| Sbjct 1260295 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG---AGCTGCTTGCCGGCGA 1260239 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | ||||| ||||| || || || || | |||||||||||| || || ||| || Sbjct 1260238 AGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 1260179 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | ||||| | ||| ||||| | ||| || |||||||||||||| ||||||| Sbjct 1260178 TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 1260119 Query 45324 CAAA 45327 | || Sbjct 1260118 CGAA 1260115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072859920206