Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq380 105 1e-17
seq477 98.7 2e-15
seq1 95.1 2e-14
seq389 84.2 4e-11
>seq380
Length=646993
Score = 105 bits (116), Expect = 1e-17
Identities = 396/615 (64%), Gaps = 17/615 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||| ||||| |||
Sbjct 391941 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 392000
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| | ||| || || |||| || || || || || || || |
Sbjct 392001 GACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACGAATTCGATG 392060
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || | ||||||||||| | || |||||| | |||||| |
Sbjct 392061 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGGAGAGCCTCAGTAAGA 392120
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798
|| |||| || | | ||| || || | ||| ||| ||| ||| | | | |
Sbjct 392121 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 392180
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | || || | |||| ||||| | |||| | ||| |||||||| ||
Sbjct 392181 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCGGTGTGAAGACCCTCATC 392236
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| |||| |||||| || | | ||| |||||||| | ||||| ||| |||||||
Sbjct 392237 ACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 392296
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | ||||| || ||| | | |||||| || | | ||||||||
Sbjct 392297 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 392356
Query 251979 GCGCTCAGCAAACG------ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032
|||| ||| || | ||| ||||| || | | || ||||| | |||||
Sbjct 392357 ACGCTGAGCGAAGGTAGAGTTCTTATCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 392413
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||||| | || || || || | || | ||||| | | |||| |||| |||
Sbjct 392414 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 392473
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152
|| |||| | ||| | ||||| ||||| | || || |||||| || | | ||
Sbjct 392474 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 392533
Query 252153 CTGGTAAGCATAGAA 252167
|||| || |||||||
Sbjct 392534 CTGGAAACCATAGAA 392548
>seq477
Length=303733
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || |||||||| || |||||||||||||||||||| | | || || || || |
Sbjct 201852 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 201911
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
||| || |||||||| || ||||| || || || ||||| | ||| ||||| | ||
Sbjct 201912 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATTGC 201971
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
||||| | | |||||| | ||||| | | || | || ||||| ||||||
Sbjct 201972 ATGGCTCGAGAACTACCT--CAAGTCTCACCCCGACATTACCAGTCTTATTGTTTCTCAC 202029
Query 279873 GACTCTGGCTTC 279884
||||||||||||
Sbjct 202030 GACTCTGGCTTC 202041
>seq1
Length=546063
Score = 95.1 bits (104), Expect = 2e-14
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 415964 GGTGAGGATCTTTGCAACTGTACATTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 416023
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| |||||||| || |
Sbjct 416024 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 416083
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 416084 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 416142
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569
||||| | ||| || | || ||||||||| | |||||| ||
Sbjct 416143 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 416188
>seq389
Length=813516
Score = 84.2 bits (92), Expect = 4e-11
Identities = 230/350 (66%), Gaps = 3/350 (1%)
Strand=Plus/Minus
Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148
|||| ||||| ||| ||||| ||| || | || |||| | || || ||||
Sbjct 461356 CCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAG 461297
Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCT 294208
||||||||||| |||| |||| | |||| ||| | | | | |||| || ||||
Sbjct 461296 CAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCT 461237
Query 294209 TCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCT 294268
||||||| |||||| || ||| | || | |||| || || ||||| | |||||
Sbjct 461236 TCATGAAAAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCT 461177
Query 294269 CACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGAT 294328
||| ||||| ||||| ||||| || | || ||||| || ||||| || |
Sbjct 461176 TACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGT 461117
Query 294329 ACACAGCAAAGG-ACCCCTT--CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT 294385
| | || |||| ||| | | || || ||||||| |||| || ||| |||
Sbjct 461116 AGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGT 461057
Query 294386 CAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCG 294435
||||| |||||| || ||||| || | ||| ||||||||| |||
Sbjct 461056 TGAACACACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCG 461007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027830399788726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |