Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq85 113 4e-20
seq380 84.2 2e-11
>seq85
Length=135120
Score = 113 bits (124), Expect = 4e-20
Identities = 149/203 (73%), Gaps = 9/203 (4%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 93988 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 94047
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC--GG----TGATTTTTTGT 138534
|||| || ||||| |||||||| || ||||| || ||||| || || | || |
Sbjct 94048 AAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATNNTGGATCTTGGA 94107
Query 138535 TTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
|| | ||| || | |||||||| ||||||||||| | || | ||| || || || |
Sbjct 94108 CTTGACGTTG-TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGA 94166
Query 138593 GAGTTTTTACAAAAATCTGCATG 138615
| || || || ||||||||||||
Sbjct 94167 GGGTCTTGACGAAAATCTGCATG 94189
>seq380
Length=646993
Score = 84.2 bits (92), Expect = 2e-11
Identities = 257/392 (66%), Gaps = 19/392 (5%)
Strand=Plus/Minus
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
|||||| ||||||| | | || | | ||| | ||||| || |||| || ||
Sbjct 392312 CTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAA 392253
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---A 52558
|||| | || || || || || || || ||||| |||||||| || |||| ||| |
Sbjct 392252 CGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTCCACTCTCA 392193
Query 52559 CAAGACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGG 52617
| | | | |||| | | ||| ||| ||||| | ||| ||| || |
Sbjct 392192 CCTCAAGGGACGTGCCAGCAAACA--GAT--------GATCCAGGACATTATCACCGATG 392143
Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677
| || |||| || |||||||| |||| | || || || | ||||| |||||||
Sbjct 392142 CCGTTTCTATTGAGCAGGAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGA 392083
Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737
|| | | |||| |||||||||| || || || |||||||| | || ||||
Sbjct 392082 ACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCG 392023
Query 52738 GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796
| || | | ||| | ||| | ||| || || || || ||| | ||||| || |||
Sbjct 392022 G-CAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTT 391964
Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
| |||||||||||||| ||||||||||| ||
Sbjct 391963 GGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 391932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259385205920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |