Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31]
486 sequences; 36,567,111 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq323 118 1e-21
seq85 102 8e-17
seq58 102 8e-17
>seq323
Length=1534178
Score = 118 bits (130), Expect = 1e-21
Identities = 122/159 (77%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || || ||| ||||||||||||||||||| || || |||||||||||
Sbjct 1260261 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 1260202
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| |
Sbjct 1260201 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 1260142
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116
|| ||||| ||||| || || || ||| ||| |||||
Sbjct 1260141 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 1260105
>seq85
Length=135120
Score = 102 bits (112), Expect = 8e-17
Identities = 166/236 (70%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| |||| |
Sbjct 93955 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 94014
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||| | ||||||||| || || ||
Sbjct 94015 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 94074
Query 127007 ATGCCCTCCTTGTCCGTGATTT----TCT---GCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|| |||||||||||| ||| ||| ||||| |||| || | |||||| | |
Sbjct 94075 ATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAG 94133
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||| || || | ||| | ||| || || || || || || || ||||||||||||
Sbjct 94134 ACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189
>seq58
Length=162708
Score = 102 bits (112), Expect = 8e-17
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||||||| | ||||| ||| || ||||| || ||
Sbjct 44105 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 44164
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||||||||||||||| ||||| || ||||||||| ||| || |||
Sbjct 44165 GCGAAAATCAATCGCTGCTGATCAGGAGGGAT--NNTCCTTGTCCTGGATCTTGGACTTC 44222
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||| |||| ||| | || ||||| || || ||
Sbjct 44223 ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 44282
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || || |||||
Sbjct 44283 TTGACGAAGATTTGCAT 44299
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/213 (71%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| || | || | |||| || | || || || || || || || ||
Sbjct 43787 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATA 43845
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
||| | || ||| || || ||||| || || ||| | |||||||||||||||||
Sbjct 43846 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 43905
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
||||| || |||||||||||| ||| || ||||| |||| |||| ||||| |
Sbjct 43906 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGATG 43964
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
|||||| || | ||| | || ||||||||||
Sbjct 43965 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTCA 43997
Score = 86.0 bits (94), Expect = 6e-12
Identities = 99/131 (76%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
|||||||||||||| ||||| ||||||||||||||| || || ||||| |||| ||
Sbjct 44430 AATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TC 44488
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| || || | ||| || |||| ||| | || |||||||||| || || || ||
Sbjct 44489 GATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAA 44548
Query 127105 AATCTGCATGG 127115
||||||||||
Sbjct 44549 GATCTGCATGG 44559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497911332640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |