Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F000966645.1_202015-03-31] 486 sequences; 36,567,111 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq323 118 1e-21 seq85 102 8e-17 seq58 102 8e-17 >seq323 Length=1534178 Score = 118 bits (130), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||||||||||||||| || || ||||||||||| Sbjct 1260261 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 1260202 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| | Sbjct 1260201 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 1260142 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || ||||| ||||| || || || ||| ||| ||||| Sbjct 1260141 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 1260105 >seq85 Length=135120 Score = 102 bits (112), Expect = 8e-17 Identities = 166/236 (70%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 93955 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 94014 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 94015 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 94074 Query 127007 ATGCCCTCCTTGTCCGTGATTT----TCT---GCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || |||||||||||| ||| ||| ||||| |||| || | |||||| | | Sbjct 94075 ATACCCTCCTTGTCCTGGATNNTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAG 94133 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || || | ||| | ||| || || || || || || || |||||||||||| Sbjct 94134 ACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 94189 >seq58 Length=162708 Score = 102 bits (112), Expect = 8e-17 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||||||| | ||||| ||| || ||||| || || Sbjct 44105 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 44164 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| || ||||||||| ||| || ||| Sbjct 44165 GCGAAAATCAATCGCTGCTGATCAGGAGGGAT--NNTCCTTGTCCTGGATCTTGGACTTC 44222 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| |||| ||| | || ||||| || || || Sbjct 44223 ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 44282 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 44283 TTGACGAAGATTTGCAT 44299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||| || | || || || || || || || || Sbjct 43787 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTATA 43845 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | || ||| || || ||||| || || ||| | ||||||||||||||||| Sbjct 43846 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 43905 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| || |||||||||||| ||| || ||||| |||| |||| ||||| | Sbjct 43906 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGATG 43964 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||||| || | ||| | || |||||||||| Sbjct 43965 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTCA 43997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 |||||||||||||| ||||| ||||||||||||||| || || ||||| |||| || Sbjct 44430 AATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TC 44488 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || || || | ||| || |||| ||| | || |||||||||| || || || || Sbjct 44489 GATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAA 44548 Query 127105 AATCTGCATGG 127115 |||||||||| Sbjct 44549 GATCTGCATGG 44559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497911332640